Wall clock time and date at job start Mon Mar 30 2020 02:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99778 * 2 1 4 4 H 1.48501 * 109.46736 * 269.99998 * 3 2 1 5 5 H 1.48490 * 109.47530 * 29.99822 * 3 2 1 6 6 H 1.48500 * 109.47196 * 150.00305 * 3 2 1 7 7 C 1.37874 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99967 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99985 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.89412 * 59.48012 * 9 7 2 11 11 C 1.54382 * 109.82979 * 180.41062 * 9 7 2 12 12 C 1.55407 * 102.30771 * 140.79693 * 11 9 7 13 13 C 1.54942 * 100.89624 * 325.99137 * 12 11 9 14 14 H 1.09007 * 110.31116 * 277.36052 * 13 12 11 15 15 C 1.52995 * 110.31268 * 155.29077 * 13 12 11 16 16 C 1.53003 * 109.47289 * 176.39173 * 15 13 12 17 17 C 1.53001 * 117.51964 * 116.28130 * 16 15 13 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 15 19 19 O 1.43237 * 109.82812 * 298.54291 * 9 7 2 20 20 H 0.96999 * 119.99917 * 359.97438 * 1 2 3 21 21 H 1.09002 * 110.84694 * 259.05847 * 11 9 7 22 22 H 1.08999 * 110.84883 * 22.47377 * 11 9 7 23 23 H 1.09008 * 111.21105 * 208.06168 * 12 11 9 24 24 H 1.09003 * 111.08430 * 83.86818 * 12 11 9 25 25 H 1.08999 * 109.47504 * 56.38608 * 15 13 12 26 26 H 1.09005 * 109.46851 * 296.38762 * 15 13 12 27 27 H 1.09002 * 115.54973 * 330.57913 * 16 15 13 28 28 H 1.09001 * 117.49733 * 214.97413 * 17 16 15 29 29 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 30 30 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 31 31 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8821 -0.6741 0.8835 11 6 4.0353 -2.6462 -0.0111 12 6 5.2548 -2.5512 -0.9696 13 6 4.7570 -1.4794 -1.9717 14 1 4.1229 -1.9370 -2.7312 15 6 5.9450 -0.7734 -2.6281 16 6 5.4342 0.2160 -3.6774 17 6 5.7134 1.7019 -3.4432 18 6 6.4765 0.9423 -4.5302 19 8 3.9979 -0.5494 -1.1830 20 1 -0.4850 0.8400 0.0004 21 1 4.3484 -2.9534 0.9868 22 1 3.2816 -3.3274 -0.4062 23 1 5.4381 -3.5020 -1.4702 24 1 6.1444 -2.2105 -0.4398 25 1 6.5872 -1.5122 -3.1075 26 1 6.5133 -0.2363 -1.8686 27 1 4.4906 -0.0497 -4.1541 28 1 4.9535 2.4138 -3.7656 29 1 6.2609 1.9750 -2.5411 30 1 7.5261 0.7154 -4.3433 31 1 6.2186 1.1539 -5.5679 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885278208.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:59 Heat of formation + Delta-G solvation = -33.613939 kcal Electronic energy + Delta-G solvation = -12763.579188 eV Core-core repulsion = 10624.364999 eV Total energy + Delta-G solvation = -2139.214189 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.65173 -36.85663 -32.61587 -31.21859 -30.54155 -26.96605 -23.53592 -22.12393 -20.64799 -20.51386 -19.64235 -16.74337 -15.82289 -15.59044 -14.80659 -14.09667 -13.80112 -12.80610 -12.64836 -12.55813 -12.17071 -11.95215 -11.30505 -11.23049 -10.90241 -10.66588 -10.59560 -10.43254 -9.81607 -9.73993 -9.70646 -9.53202 -9.37295 -8.54461 -8.06199 -6.04078 -4.12334 3.46451 3.53701 3.64075 4.08057 4.56193 4.78878 4.89149 5.17891 5.24218 5.41426 5.41941 5.57059 5.74218 5.80023 5.83974 5.92283 6.04723 6.13870 6.25519 6.32132 6.35645 6.45756 6.51954 6.58073 6.70983 6.80996 7.35244 7.70830 8.34228 8.52598 8.96637 9.61019 11.06753 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.014369 C = 0.010789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.011882 B = 1948.127056 C = 2594.532419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.082 3.918 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.166 3.834 10 H 0.040 0.960 11 C -0.135 4.135 12 C -0.154 4.154 13 C 0.086 3.914 14 H 0.059 0.941 15 C -0.087 4.087 16 C -0.136 4.136 17 C -0.175 4.175 18 C -0.192 4.192 19 O -0.384 6.384 20 H 0.264 0.736 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.443 -0.762 -5.305 13.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.122 4.122 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.093 0.907 9 C 0.110 3.890 10 H 0.057 0.943 11 C -0.172 4.172 12 C -0.192 4.192 13 C 0.028 3.972 14 H 0.077 0.923 15 C -0.124 4.124 16 C -0.154 4.154 17 C -0.212 4.212 18 C -0.229 4.229 19 O -0.305 6.305 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.254 -0.451 -5.348 13.378 hybrid contribution 0.281 0.663 0.005 0.720 sum 12.535 0.212 -5.343 13.628 Atomic orbital electron populations 1.69950 1.06614 1.27259 1.49730 1.25038 0.94634 0.99860 0.92622 0.86370 0.79490 0.82111 0.78875 1.19860 1.22924 1.19098 1.21341 0.88811 0.94628 1.51951 0.90733 1.20818 0.94771 0.88534 0.84830 0.94261 1.23035 0.96015 0.99800 0.98393 1.23288 0.98764 0.99005 0.98165 1.22679 0.91380 0.89511 0.93598 0.92318 1.21364 0.97155 0.97384 0.96527 1.22232 0.99423 0.93639 1.00152 1.22922 1.02985 0.95299 0.99962 1.22977 0.97327 1.06304 0.96263 1.88465 1.69780 1.36438 1.35818 0.92674 0.92032 0.91067 0.91450 0.91576 0.91279 0.91671 0.87792 0.89255 0.89070 0.89305 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 2 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.90 23.84 26.28 -169.99 -4.47 19.37 16 4 H -0.27 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.86 6.53 56.52 0.37 -6.49 16 7 C -0.53 -15.48 9.33 -34.44 -0.32 -15.80 16 8 H 0.07 2.31 7.76 -52.49 -0.41 1.90 16 9 C 0.17 4.10 2.82 -27.16 -0.08 4.02 16 10 H 0.04 1.00 7.18 -51.93 -0.37 0.63 16 11 C -0.13 -2.70 6.53 -24.73 -0.16 -2.86 16 12 C -0.15 -2.59 6.58 -24.43 -0.16 -2.76 16 13 C 0.09 1.64 3.37 -25.71 -0.09 1.55 16 14 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 15 C -0.09 -1.37 5.23 -26.73 -0.14 -1.51 16 16 C -0.14 -2.17 5.60 -90.61 -0.51 -2.68 16 17 C -0.17 -2.70 10.18 -26.73 -0.27 -2.98 16 18 C -0.19 -2.49 10.25 -26.73 -0.27 -2.77 16 19 O -0.38 -9.24 8.41 -35.23 -0.30 -9.54 16 20 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 21 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.07 1.47 7.65 -51.93 -0.40 1.07 16 23 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 24 H 0.07 1.02 8.06 -51.93 -0.42 0.61 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 27 H 0.10 1.76 8.08 -51.93 -0.42 1.34 16 28 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.09 1.40 8.03 -51.93 -0.42 0.98 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 254.69 15.07 3.84 3.84 Total: -1.00 -31.50 254.69 -7.22 -38.71 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.97 Total: -1.55 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.10 Total: -23.40 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.77 Total: -27.44 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.30 Total: -9.54 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -4.47 Total: 19.37 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.50 -7.22 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885278208.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.099 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds