Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99653 * 2 1 4 4 H 1.48495 * 109.47253 * 270.00069 * 3 2 1 5 5 H 1.48497 * 109.47273 * 30.00249 * 3 2 1 6 6 H 1.48506 * 109.46834 * 150.00226 * 3 2 1 7 7 C 1.37874 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99919 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.67625 * 298.49300 * 9 7 2 11 11 C 1.54996 * 110.61943 * 175.52261 * 9 7 2 12 12 C 1.54807 * 102.09320 * 204.47755 * 11 9 7 13 13 C 1.54096 * 104.18767 * 20.88151 * 12 11 9 14 14 H 1.09004 * 109.87713 * 242.60387 * 13 12 11 15 15 C 1.53002 * 109.87859 * 121.45496 * 13 12 11 16 16 C 1.53003 * 109.47196 * 175.71498 * 15 13 12 17 17 C 1.53002 * 117.49583 * 243.62002 * 16 15 13 18 18 C 1.52997 * 117.49805 * 175.00010 * 16 15 13 19 19 O 1.43741 * 107.29619 * 2.03213 * 13 12 11 20 20 H 0.96993 * 120.00321 * 359.97438 * 1 2 3 21 21 H 1.09000 * 110.90545 * 322.67775 * 11 9 7 22 22 H 1.09004 * 110.90489 * 86.27593 * 11 9 7 23 23 H 1.09003 * 110.48700 * 262.20320 * 12 11 9 24 24 H 1.08995 * 110.48708 * 139.56056 * 12 11 9 25 25 H 1.08998 * 109.47190 * 295.71578 * 15 13 12 26 26 H 1.09004 * 109.47105 * 55.71315 * 15 13 12 27 27 H 1.08996 * 115.54714 * 29.32532 * 16 15 13 28 28 H 1.08998 * 117.50312 * 0.02562 * 17 16 15 29 29 H 1.09006 * 117.49678 * 145.01805 * 17 16 15 30 30 H 1.08999 * 117.50060 * 214.97418 * 18 16 15 31 31 H 1.09000 * 117.49787 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6378 -2.5894 0.8959 11 6 2.2307 -3.6949 -0.1144 12 6 1.3295 -4.7954 -0.7254 13 6 0.1707 -4.0160 -1.3769 14 1 -0.7710 -4.2823 -0.8969 15 6 0.1046 -4.3353 -2.8718 16 6 -1.1120 -3.6417 -3.4881 17 6 -2.2114 -4.5310 -4.0724 18 6 -1.2895 -3.7420 -5.0044 19 8 0.4373 -2.6163 -1.1874 20 1 -0.4850 0.8400 0.0004 21 1 3.0597 -3.4565 -0.7808 22 1 2.5967 -3.9928 0.8682 23 1 0.9533 -5.4571 0.0548 24 1 1.8775 -5.3634 -1.4771 25 1 1.0118 -3.9792 -3.3598 26 1 0.0170 -5.4130 -3.0096 27 1 -1.4183 -2.7134 -3.0058 28 1 -2.0682 -5.6101 -4.0174 29 1 -3.2414 -4.1879 -3.9745 30 1 -1.7130 -2.8800 -5.5197 31 1 -0.5393 -4.3019 -5.5629 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885278210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -56.058752 kcal Electronic energy + Delta-G solvation = -12591.691140 eV Core-core repulsion = 10451.503671 eV Total energy + Delta-G solvation = -2140.187469 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.08095 -38.04517 -34.77939 -32.64033 -31.88121 -28.43417 -25.43728 -23.22419 -22.55269 -21.49883 -21.20562 -18.68726 -17.04895 -16.77038 -16.25128 -16.17492 -15.11369 -14.98300 -14.18561 -13.91168 -13.43889 -13.36115 -12.85656 -12.65316 -12.36949 -12.32048 -12.11019 -12.05865 -11.74846 -11.38983 -11.03759 -10.90174 -10.71728 -10.65403 -9.91218 -8.16462 -6.37070 1.39135 1.41320 1.51790 2.39811 2.95674 3.06929 3.62594 3.80415 3.97659 4.09289 4.14314 4.22793 4.40481 4.49497 4.58973 4.76300 4.78223 4.92081 4.95671 4.98989 5.03925 5.20736 5.23965 5.28949 5.43275 5.46974 5.55586 5.74099 6.16651 6.59059 6.99629 7.38443 8.92235 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.037014 B = 0.010519 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.283994 B = 2661.125556 C = 3163.588594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.554 4.554 8 H 0.067 0.933 9 C 0.197 3.803 10 H -0.011 1.011 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.057 3.943 14 H 0.039 0.961 15 C -0.070 4.070 16 C -0.172 4.172 17 C -0.167 4.167 18 C -0.176 4.176 19 O -0.384 6.384 20 H 0.261 0.739 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -9.375 -5.898 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.591 4.591 8 H 0.085 0.915 9 C 0.141 3.859 10 H 0.006 0.994 11 C -0.178 4.178 12 C -0.178 4.178 13 C -0.002 4.002 14 H 0.057 0.943 15 C -0.107 4.107 16 C -0.190 4.190 17 C -0.204 4.204 18 C -0.212 4.212 19 O -0.305 6.305 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.401 -9.109 -6.022 10.927 hybrid contribution 0.111 1.051 0.373 1.121 sum -0.290 -8.058 -5.649 9.845 Atomic orbital electron populations 1.70190 1.07790 1.27404 1.48752 1.26006 0.95665 1.03260 0.93260 0.85494 0.78932 0.78459 0.78362 1.20144 1.20498 1.18310 1.21460 0.93154 0.91428 1.53107 0.91506 1.20564 0.87193 0.93957 0.84173 0.99388 1.23070 0.98598 0.95416 1.00670 1.22945 0.96405 0.97728 1.00717 1.22781 0.96713 0.84407 0.96253 0.94334 1.21258 0.96433 0.99985 0.93025 1.22181 0.99264 1.00979 0.96593 1.23112 0.95438 0.98575 1.03236 1.23009 1.03341 1.03002 0.91892 1.89172 1.72628 1.21728 1.46925 0.93004 0.92005 0.90818 0.90159 0.89057 0.92358 0.88628 0.91316 0.87007 0.88843 0.89079 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.59 12.94 21.45 0.28 -56.31 16 2 C 0.02 1.17 5.42 84.65 0.46 1.63 16 3 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -32.56 8.83 25.60 0.23 -32.33 16 8 H 0.07 3.75 7.78 -2.91 -0.02 3.73 16 9 C 0.20 10.76 3.16 30.53 0.10 10.85 16 10 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 11 C -0.14 -5.88 6.55 31.89 0.21 -5.67 16 12 C -0.14 -4.87 6.64 31.58 0.21 -4.66 16 13 C 0.06 2.34 3.39 30.97 0.11 2.45 16 14 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 15 C -0.07 -2.35 4.99 30.60 0.15 -2.20 16 16 C -0.17 -5.91 5.64 -10.79 -0.06 -5.97 16 17 C -0.17 -4.30 10.18 30.59 0.31 -3.99 16 18 C -0.18 -4.73 10.25 30.59 0.31 -4.42 16 19 O -0.38 -21.07 10.04 -148.98 -1.50 -22.56 16 20 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 21 H 0.06 2.59 8.05 -2.39 -0.02 2.57 16 22 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 23 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.09 2.62 7.70 -2.39 -0.02 2.60 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.10 2.49 7.88 -2.38 -0.02 2.48 16 27 H 0.07 2.99 7.82 -2.39 -0.02 2.97 16 28 H 0.11 2.37 8.03 -2.39 -0.02 2.35 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -68.10 259.59 3.91 -64.20 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.08 Total: 11.77 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 2.02 Total: -44.32 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.28 Total: -56.31 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.50 Total: -22.56 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.10 3.91 -64.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885278210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.136 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds