Wall clock time and date at job start Mon Mar 30 2020 02:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.54168 * 111.93298 * 299.49043 * 10 9 7 12 12 C 1.56011 * 103.64759 * 212.43542 * 11 10 9 13 13 C 1.55071 * 101.63994 * 40.74109 * 12 11 10 14 14 C 1.54486 * 103.76056 * 318.67257 * 13 12 11 15 15 H 1.09006 * 111.48028 * 147.88801 * 14 13 12 16 16 O 1.43798 * 108.51083 * 271.72877 * 14 13 12 17 17 C 1.44297 * 107.21985 * 139.95682 * 16 14 13 18 18 C 1.54612 * 111.97745 * 63.39632 * 10 9 7 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09005 * 110.49625 * 332.43838 * 11 10 9 23 23 H 1.09003 * 110.49982 * 95.12038 * 11 10 9 24 24 H 1.09004 * 111.74300 * 282.42451 * 12 11 10 25 25 H 1.09002 * 110.54102 * 158.52787 * 12 11 10 26 26 H 1.08998 * 110.57368 * 200.10060 * 13 12 11 27 27 H 1.09001 * 110.56980 * 77.23534 * 13 12 11 28 28 H 1.08997 * 110.61832 * 78.47011 * 17 16 14 29 29 H 1.09001 * 110.62215 * 201.31985 * 17 16 14 30 30 H 1.08996 * 110.90130 * 217.97303 * 18 10 9 31 31 H 1.08996 * 110.90239 * 341.56951 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 3.1544 -3.6424 -1.2443 12 6 3.4259 -5.1527 -1.5258 13 6 2.0309 -5.7760 -1.2612 14 6 1.5317 -5.0375 0.0006 15 1 0.4475 -4.9255 -0.0052 16 8 1.9942 -5.7510 1.1602 17 6 2.3980 -4.7664 2.1347 18 6 3.1091 -3.6847 1.2825 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.6478 -3.1583 -2.0793 23 1 4.0946 -3.1375 -1.0223 24 1 4.1709 -5.5629 -0.8439 25 1 3.7275 -5.3003 -2.5628 26 1 2.1193 -6.8453 -1.0692 27 1 1.3629 -5.5910 -2.1025 28 1 1.5278 -4.3467 2.6394 29 1 3.0868 -5.2025 2.8583 30 1 4.1336 -3.9796 1.0558 31 1 3.0862 -2.7173 1.7840 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535751219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:14 Heat of formation + Delta-G solvation = -86.019797 kcal Electronic energy + Delta-G solvation = -13060.554950 eV Core-core repulsion = 10919.068272 eV Total energy + Delta-G solvation = -2141.486678 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 196.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.28550 -36.44938 -35.08052 -33.08976 -30.22127 -28.44412 -27.30790 -24.58423 -23.07499 -21.56314 -19.88001 -18.23155 -17.17623 -16.52079 -16.41168 -16.03831 -15.45174 -14.69747 -14.32771 -14.19183 -13.63215 -13.12757 -13.06516 -12.69546 -12.38664 -12.23462 -11.98188 -11.84426 -11.75751 -11.66996 -11.18893 -10.96633 -10.86266 -10.55997 -10.45962 -8.17566 -6.26180 1.39280 1.40516 1.52624 2.41368 3.01633 3.16407 3.66535 3.75188 4.03562 4.23177 4.33078 4.35010 4.48329 4.61230 4.73744 4.84134 4.88133 4.91350 5.06488 5.15191 5.22151 5.26933 5.30804 5.37942 5.49964 5.57212 5.72681 5.82974 6.09047 6.27600 6.88814 7.42213 8.94774 Molecular weight = 196.12amu Principal moments of inertia in cm(-1) A = 0.048056 B = 0.011066 C = 0.010577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.511614 B = 2529.754987 C = 2646.532196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.958 3.042 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.049 3.951 10 C -0.083 4.083 11 C -0.097 4.097 12 C -0.113 4.113 13 C -0.118 4.118 14 C 0.067 3.933 15 H 0.053 0.947 16 O -0.388 6.388 17 C 0.048 3.952 18 C -0.135 4.135 19 H 0.261 0.739 20 H -0.017 1.017 21 H -0.012 1.012 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -8.568 -0.376 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.012 3.988 10 C -0.084 4.084 11 C -0.135 4.135 12 C -0.150 4.150 13 C -0.156 4.156 14 C 0.010 3.990 15 H 0.071 0.929 16 O -0.308 6.308 17 C -0.028 4.028 18 C -0.172 4.172 19 H 0.070 0.930 20 H 0.002 0.998 21 H 0.007 0.993 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.904 -8.692 -0.352 11.106 hybrid contribution -0.347 1.471 0.122 1.516 sum 6.557 -7.221 -0.230 9.757 Atomic orbital electron populations 1.70111 1.07815 1.27435 1.52414 1.25928 0.95613 1.03127 0.95258 0.85489 0.79320 0.79322 0.77491 1.18353 1.20778 1.20793 1.21541 0.93423 0.91352 1.49038 0.91745 1.18893 0.93247 0.92541 0.94102 1.22455 0.95839 0.93690 0.96384 1.22411 0.98185 0.96600 0.96294 1.22711 0.96402 0.93922 1.01972 1.22553 0.97672 1.00044 0.95292 1.23625 0.96813 0.91628 0.86982 0.92878 1.88714 1.84233 1.31340 1.26496 1.23582 0.98121 0.89131 0.91985 1.23080 0.99080 0.99448 0.95620 0.93023 0.99829 0.99339 0.92776 0.92088 0.90807 0.89831 0.89970 0.90358 0.93768 0.86773 0.89926 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.52 -28.27 7.68 25.60 0.20 -28.08 16 8 H 0.06 3.38 7.36 -2.91 -0.02 3.36 16 9 C 0.05 2.57 4.03 29.85 0.12 2.69 16 10 C -0.08 -3.39 0.56 -50.58 -0.03 -3.42 16 11 C -0.10 -3.51 5.01 32.03 0.16 -3.35 16 12 C -0.11 -3.19 6.92 32.35 0.22 -2.96 16 13 C -0.12 -3.55 6.46 31.81 0.21 -3.34 16 14 C 0.07 2.50 3.97 31.76 0.13 2.62 16 15 H 0.05 2.14 7.86 -2.38 -0.02 2.12 16 16 O -0.39 -14.00 11.08 -148.98 -1.65 -15.65 16 17 C 0.05 1.60 7.72 72.66 0.56 2.16 16 18 C -0.13 -4.92 5.88 31.82 0.19 -4.73 16 19 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 20 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 21 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 22 H 0.05 2.12 7.96 -2.38 -0.02 2.10 16 23 H 0.06 2.15 7.80 -2.39 -0.02 2.13 16 24 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.08 2.64 7.69 -2.39 -0.02 2.63 16 31 H 0.07 2.82 7.17 -2.39 -0.02 2.80 16 Total: -1.00 -62.41 248.16 3.96 -58.45 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.08 Total: 5.96 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 2.21 Total: -38.07 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.65 Total: -15.65 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -62.41 3.96 -58.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535751219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.567 kcal (2) G-P(sol) polarization free energy of solvation -62.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds