Wall clock time and date at job start Mon Mar 30 2020 02:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.33875 * 122.76488 * 269.71158 * 11 10 9 13 13 O 1.21230 * 125.39200 * 359.97438 * 12 11 10 14 14 C 1.51315 * 109.20750 * 179.83865 * 12 11 10 15 15 C 1.54230 * 103.55426 * 0.38916 * 14 12 11 16 16 C 1.33875 * 122.75903 * 89.99982 * 11 10 9 17 17 O 1.21226 * 125.40090 * 359.97438 * 16 11 10 18 18 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.08998 * 110.79380 * 241.77795 * 14 12 11 24 24 H 1.09002 * 110.54273 * 118.87508 * 14 12 11 25 25 H 1.08995 * 110.60329 * 241.25892 * 15 14 12 26 26 H 1.08997 * 110.60287 * 118.29489 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.2109 -2.6425 -1.1259 13 8 5.7598 -2.6484 -2.2511 14 6 7.6819 -2.6368 -0.7713 15 6 7.6819 -2.6370 0.7710 16 6 6.2108 -2.6370 1.1257 17 8 5.7599 -2.6366 2.2509 18 1 -0.4850 0.8401 -0.0004 19 1 3.8751 -0.6798 -0.8895 20 1 3.8745 -0.6810 0.8905 21 1 3.6577 -3.1507 0.8897 22 1 3.6584 -3.1504 -0.8902 23 1 8.1689 -1.7403 -1.1548 24 1 8.1713 -3.5320 -1.1550 25 1 8.1690 -1.7406 1.1547 26 1 8.1690 -3.5335 1.1545 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019508088.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:51 Heat of formation + Delta-G solvation = -73.083304 kcal Electronic energy + Delta-G solvation = -12378.034373 eV Core-core repulsion = 10035.849658 eV Total energy + Delta-G solvation = -2342.184715 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.54746 -38.27958 -35.63221 -34.30110 -32.50498 -29.98345 -26.07183 -25.26154 -22.13684 -21.28072 -19.08843 -17.32552 -16.70042 -16.27356 -16.19183 -14.47378 -14.20646 -14.01269 -13.80111 -13.73046 -13.20207 -12.81397 -12.64207 -11.77820 -11.42297 -11.07217 -10.87973 -10.38589 -10.17709 -9.85549 -9.74967 -9.33005 -9.12191 -8.58417 -6.09096 -4.08750 1.70469 2.86675 2.98467 3.29399 3.36019 3.39772 4.14193 4.30996 4.41863 4.46244 4.78389 5.24707 5.33648 5.50580 5.54887 5.82444 5.84646 6.11801 6.45464 7.00508 7.11102 7.35558 7.56916 7.66186 8.05212 8.43831 8.92764 9.51878 11.03872 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.044746 B = 0.010290 C = 0.009927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.603760 B = 2720.396007 C = 2820.002625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.109 3.891 11 N -0.571 5.571 12 C 0.521 3.479 13 O -0.482 6.482 14 C -0.158 4.158 15 C -0.158 4.158 16 C 0.521 3.479 17 O -0.482 6.482 18 H 0.265 0.735 19 H 0.017 0.983 20 H 0.021 0.979 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.066 -4.461 0.018 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C -0.010 4.010 11 N -0.314 5.314 12 C 0.310 3.690 13 O -0.354 6.354 14 C -0.198 4.198 15 C -0.198 4.198 16 C 0.309 3.691 17 O -0.354 6.354 18 H 0.075 0.925 19 H 0.035 0.965 20 H 0.040 0.960 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.364 -4.352 0.021 16.933 hybrid contribution 0.266 0.964 -0.018 1.000 sum 16.630 -3.389 0.004 16.972 Atomic orbital electron populations 1.69898 1.06216 1.27060 1.50493 1.24951 0.94747 0.99109 0.94239 0.86775 0.80345 0.83612 0.78581 1.20114 1.21099 1.19199 1.20874 0.88452 0.94917 1.51767 0.90592 1.19854 0.97989 0.91234 0.96927 1.22030 0.73452 1.01814 1.03736 1.47030 1.11193 1.64440 1.08698 1.20750 0.89784 0.74324 0.84182 1.90773 1.77866 1.45384 1.21371 1.22466 0.94661 1.06718 0.95942 1.22470 0.94673 1.06695 0.95943 1.20753 0.89787 0.74324 0.84186 1.90771 1.77870 1.45352 1.21370 0.92540 0.96496 0.96048 0.89414 0.89433 0.86513 0.86597 0.86535 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 15 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 3 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 15 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 15 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 6 H -0.27 -6.61 6.54 56.52 0.37 -6.24 15 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 15 8 H 0.08 2.33 7.99 -52.49 -0.42 1.92 15 9 C -0.02 -0.55 4.36 -27.88 -0.12 -0.67 15 10 C 0.11 2.28 5.49 -4.04 -0.02 2.26 15 11 N -0.57 -9.84 2.55 -115.34 -0.29 -10.14 15 12 C 0.52 8.01 8.08 -11.09 -0.09 7.92 15 13 O -0.48 -9.21 17.47 5.60 0.10 -9.11 15 14 C -0.16 -1.40 7.03 -26.94 -0.19 -1.59 15 15 C -0.16 -1.40 7.03 -26.94 -0.19 -1.59 15 16 C 0.52 8.03 8.08 -11.08 -0.09 7.94 15 17 O -0.48 -9.24 17.48 5.60 0.10 -9.14 15 18 H 0.26 7.71 8.31 -40.82 -0.34 7.37 15 19 H 0.02 0.43 7.57 -51.93 -0.39 0.03 15 20 H 0.02 0.55 7.20 -51.93 -0.37 0.17 15 21 H 0.09 1.83 7.83 -51.93 -0.41 1.43 15 22 H 0.09 1.83 7.82 -51.93 -0.41 1.42 15 23 H 0.12 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.12 0.73 8.14 -51.93 -0.42 0.30 15 25 H 0.12 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.12 0.73 8.14 -51.93 -0.42 0.31 15 LS Contribution 234.17 15.07 3.53 3.53 Total: -1.00 -34.89 234.17 -4.45 -39.34 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: -2.86 Total: -5.64 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.13 Total: 0.74 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.48 Total: -37.41 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.20 Total: -18.25 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -34.89 -4.45 -39.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019508088.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.740 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds