Wall clock time and date at job start Mon Mar 30 2020 02:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.33875 * 122.76488 * 269.71158 * 11 10 9 13 13 O 1.21230 * 125.39200 * 359.97438 * 12 11 10 14 14 C 1.51315 * 109.20750 * 179.83865 * 12 11 10 15 15 C 1.54230 * 103.55426 * 0.38916 * 14 12 11 16 16 C 1.33875 * 122.75903 * 89.99982 * 11 10 9 17 17 O 1.21226 * 125.40090 * 359.97438 * 16 11 10 18 18 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.08998 * 110.79380 * 241.77795 * 14 12 11 24 24 H 1.09002 * 110.54273 * 118.87508 * 14 12 11 25 25 H 1.08995 * 110.60329 * 241.25892 * 15 14 12 26 26 H 1.08997 * 110.60287 * 118.29489 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.2109 -2.6425 -1.1259 13 8 5.7598 -2.6484 -2.2511 14 6 7.6819 -2.6368 -0.7713 15 6 7.6819 -2.6370 0.7710 16 6 6.2108 -2.6370 1.1257 17 8 5.7599 -2.6366 2.2509 18 1 -0.4850 0.8401 -0.0004 19 1 3.8751 -0.6798 -0.8895 20 1 3.8745 -0.6810 0.8905 21 1 3.6577 -3.1507 0.8897 22 1 3.6584 -3.1504 -0.8902 23 1 8.1689 -1.7403 -1.1548 24 1 8.1713 -3.5320 -1.1550 25 1 8.1690 -1.7406 1.1547 26 1 8.1690 -3.5335 1.1545 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019508088.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:51 Heat of formation + Delta-G solvation = -99.133085 kcal Electronic energy + Delta-G solvation = -12379.163976 eV Core-core repulsion = 10035.849658 eV Total energy + Delta-G solvation = -2343.314318 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.75307 -39.57506 -37.01395 -35.94183 -34.32820 -31.71522 -27.14231 -27.04584 -23.23854 -23.20205 -20.43481 -19.20674 -17.95490 -17.78280 -17.40637 -16.41865 -15.64720 -15.26613 -15.14337 -14.96146 -14.83768 -14.53201 -13.80536 -13.45668 -13.03821 -12.69833 -12.16435 -12.04426 -11.93395 -11.74164 -11.40981 -11.01976 -10.87501 -10.69970 -8.39864 -6.46302 0.54430 1.27275 1.29406 1.40716 1.64477 1.81879 2.26914 2.94196 3.28947 3.32679 3.71404 4.10428 4.19197 4.30792 4.37621 4.58071 4.78551 4.95552 4.95931 5.10207 5.13675 5.47222 5.96928 6.11094 6.42515 6.58469 6.80639 7.18468 8.76515 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.044746 B = 0.010290 C = 0.009927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.603760 B = 2720.396007 C = 2820.002625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.539 4.539 8 H 0.040 0.960 9 C -0.010 4.010 10 C 0.117 3.883 11 N -0.584 5.584 12 C 0.511 3.489 13 O -0.530 6.530 14 C -0.135 4.135 15 C -0.135 4.135 16 C 0.510 3.490 17 O -0.530 6.530 18 H 0.270 0.730 19 H 0.015 0.985 20 H 0.016 0.984 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.147 0.853 24 H 0.154 0.846 25 H 0.146 0.854 26 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.750 -3.678 -0.011 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.059 0.941 9 C -0.048 4.048 10 C -0.005 4.005 11 N -0.326 5.326 12 C 0.303 3.697 13 O -0.405 6.405 14 C -0.174 4.174 15 C -0.174 4.174 16 C 0.303 3.697 17 O -0.405 6.405 18 H 0.079 0.921 19 H 0.033 0.967 20 H 0.034 0.966 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.165 0.835 24 H 0.172 0.828 25 H 0.164 0.836 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 20.093 -3.586 -0.008 20.410 hybrid contribution -0.954 0.625 -0.009 1.140 sum 19.139 -2.961 -0.018 19.367 Atomic orbital electron populations 1.70033 1.08059 1.28501 1.51549 1.25942 0.95707 1.03383 0.93631 0.85672 0.79293 0.78451 0.79350 1.18851 1.19902 1.17945 1.21197 0.90888 0.93875 1.51791 0.94139 1.19653 0.95178 0.93782 0.96234 1.21504 0.77126 0.98982 1.02852 1.47251 1.09430 1.65143 1.10790 1.22034 0.92517 0.72376 0.82778 1.90749 1.79286 1.47438 1.23007 1.22614 0.89064 1.09922 0.95778 1.22619 0.89048 1.09878 0.95817 1.22044 0.92539 0.72373 0.82789 1.90748 1.79301 1.47433 1.23031 0.92056 0.96655 0.96553 0.90388 0.90359 0.83520 0.82822 0.83577 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.37 13.96 21.45 0.30 -60.07 15 2 C 0.01 0.70 5.47 84.66 0.46 1.16 15 3 Si 0.95 46.11 27.47 68.60 1.88 47.99 15 4 H -0.26 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.27 -12.73 7.11 99.48 0.71 -12.03 15 6 H -0.26 -11.82 6.54 99.48 0.65 -11.17 15 7 C -0.54 -32.73 9.66 25.60 0.25 -32.48 15 8 H 0.04 2.65 7.99 -2.91 -0.02 2.63 15 9 C -0.01 -0.53 4.36 29.85 0.13 -0.40 15 10 C 0.12 5.06 5.49 86.38 0.47 5.54 15 11 N -0.58 -19.59 2.55 -756.66 -1.93 -21.53 15 12 C 0.51 14.61 8.08 87.99 0.71 15.32 15 13 O -0.53 -19.89 17.47 -2.87 -0.05 -19.94 15 14 C -0.13 -1.64 7.03 30.46 0.21 -1.42 15 15 C -0.13 -1.64 7.03 30.46 0.21 -1.43 15 16 C 0.51 14.66 8.08 87.99 0.71 15.37 15 17 O -0.53 -20.02 17.48 -2.86 -0.05 -20.07 15 18 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 19 H 0.02 0.77 7.57 -2.39 -0.02 0.76 15 20 H 0.02 0.84 7.20 -2.39 -0.02 0.82 15 21 H 0.08 3.45 7.83 -2.39 -0.02 3.43 15 22 H 0.08 3.46 7.82 -2.39 -0.02 3.44 15 23 H 0.15 1.09 8.14 -2.39 -0.02 1.07 15 24 H 0.15 0.87 8.14 -2.39 -0.02 0.85 15 25 H 0.15 1.11 8.14 -2.39 -0.02 1.09 15 26 H 0.15 0.88 8.14 -2.39 -0.02 0.86 15 Total: -1.00 -80.92 234.17 4.44 -76.48 By element: Atomic # 1 Polarization: -5.65 SS G_CDS: 1.12 Total: -4.53 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 3.16 Total: 1.67 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.63 Total: -81.60 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.10 Total: -40.01 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -80.92 4.44 -76.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019508088.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.653 kcal (2) G-P(sol) polarization free energy of solvation -80.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds