Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31358 * 1 3 3 Si 1.86803 * 120.00048 * 2 1 4 4 H 1.48497 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47123 * 300.00558 * 3 2 1 6 6 H 1.48500 * 109.46591 * 60.00495 * 3 2 1 7 7 C 1.38922 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00201 * 196.96668 * 7 2 1 9 9 N 1.37500 * 119.99854 * 16.95996 * 7 2 1 10 10 C 1.32300 * 117.43082 * 220.38809 * 9 7 2 11 11 O 1.21226 * 117.78210 * 11.16708 * 10 9 7 12 12 C 1.50306 * 124.42448 * 191.16743 * 10 9 7 13 13 C 1.53553 * 109.98536 * 43.80725 * 12 10 9 14 14 C 1.51970 * 109.04283 * 272.81974 * 13 12 10 15 15 C 1.51605 * 112.78763 * 31.51287 * 14 13 12 16 16 C 1.34615 * 117.43037 * 40.40797 * 9 7 2 17 17 O 1.21223 * 119.66215 * 13.70553 * 16 9 7 18 18 H 0.96998 * 119.99973 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.37205 * 283.64906 * 12 10 9 20 20 H 1.09007 * 109.38853 * 163.96655 * 12 10 9 21 21 H 1.08999 * 109.53999 * 152.95707 * 13 12 10 22 22 H 1.08994 * 109.54400 * 32.68596 * 13 12 10 23 23 H 1.09004 * 108.82010 * 152.36783 * 14 13 12 24 24 H 1.09006 * 108.81999 * 270.66510 * 14 13 12 25 25 H 1.09001 * 109.32987 * 174.53334 * 15 14 13 26 26 H 1.09006 * 109.32824 * 294.00317 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3464 -0.0006 5 1 1.8888 2.3965 -1.2124 6 1 1.8889 2.3963 1.2126 7 6 2.0082 -1.2031 -0.0005 8 1 3.0529 -1.2235 0.2724 9 7 1.3656 -2.3678 -0.3484 10 6 1.6463 -3.4524 0.3553 11 8 2.2821 -3.3134 1.3781 12 6 1.2301 -4.8450 -0.0275 13 6 1.4691 -5.0705 -1.5274 14 6 0.2464 -4.6040 -2.3000 15 6 -0.4637 -3.4438 -1.6306 16 6 0.5007 -2.3150 -1.3786 17 8 0.4979 -1.3488 -2.1106 18 1 -0.4850 0.8400 0.0004 19 1 0.1715 -4.9800 0.1947 20 1 1.8132 -5.5670 0.5443 21 1 1.6357 -6.1313 -1.7146 22 1 2.3416 -4.5009 -1.8473 23 1 0.5574 -4.2970 -3.2986 24 1 -0.4506 -5.4371 -2.3917 25 1 -1.2690 -3.0929 -2.2759 26 1 -0.8845 -3.7772 -0.6819 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035328134.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = -65.390041 kcal Electronic energy + Delta-G solvation = -13129.017469 eV Core-core repulsion = 10787.166359 eV Total energy + Delta-G solvation = -2341.851110 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.33047 -37.23907 -35.48468 -33.73135 -31.62048 -29.57814 -26.65763 -24.22850 -22.64003 -20.01101 -18.97982 -17.09749 -15.77636 -15.57743 -14.95612 -14.54550 -14.09643 -13.65855 -13.30878 -12.75132 -12.38025 -12.09848 -11.59147 -11.41881 -10.98228 -10.83846 -10.60568 -10.53324 -10.33610 -10.22985 -9.16146 -8.93283 -8.45526 -7.78479 -6.36767 -4.12294 2.97709 3.26442 3.34081 3.38986 4.09558 4.29781 4.60673 4.96676 5.10354 5.21190 5.28610 5.45290 5.56237 5.85683 5.95603 6.00237 6.20617 6.24385 6.39965 6.52365 6.61642 7.57233 8.07877 8.26786 8.85940 9.13972 9.47314 9.79636 10.76636 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.048143 B = 0.015349 C = 0.012879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.464470 B = 1823.791987 C = 2173.637376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.071 3.929 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.407 5.407 10 C 0.479 3.521 11 O -0.543 6.543 12 C -0.139 4.139 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.142 4.142 16 C 0.515 3.485 17 O -0.489 6.489 18 H 0.270 0.730 19 H 0.092 0.908 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -8.413 -3.745 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.138 4.138 3 Si 0.755 3.245 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.483 4.483 8 H 0.113 0.887 9 N -0.137 5.137 10 C 0.270 3.730 11 O -0.422 6.422 12 C -0.179 4.179 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.183 4.183 16 C 0.305 3.695 17 O -0.361 6.361 18 H 0.080 0.920 19 H 0.110 0.890 20 H 0.110 0.890 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.096 -7.729 -3.650 8.617 hybrid contribution 0.117 0.790 0.083 0.803 sum -0.979 -6.938 -3.567 7.863 Atomic orbital electron populations 1.69784 1.06689 1.28240 1.43986 1.25261 0.95083 1.00194 0.93304 0.85872 0.79920 0.81142 0.77597 1.19121 1.20355 1.20757 1.19373 0.95500 0.83057 1.50419 0.88721 1.41752 1.36637 1.09660 1.25604 1.20124 0.82507 0.86774 0.83626 1.90560 1.40497 1.87309 1.23874 1.21943 1.03603 0.95031 0.97361 1.21536 0.98785 1.01607 0.93921 1.21031 0.97205 0.97115 0.99699 1.21600 0.98658 0.95292 1.02710 1.20274 0.82146 0.87415 0.79651 1.90506 1.67798 1.33554 1.44268 0.91951 0.89006 0.89042 0.90769 0.91385 0.91529 0.91260 0.89047 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.34 11.60 55.49 0.64 -24.70 15 2 C 0.07 2.06 4.31 -17.50 -0.08 1.98 15 3 Si 0.93 22.53 29.58 -169.99 -5.03 17.51 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.36 -10.58 8.15 -14.76 -0.12 -10.70 15 8 H 0.10 2.83 7.74 -52.49 -0.41 2.42 15 9 N -0.41 -10.82 2.59 -61.45 -0.16 -10.98 15 10 C 0.48 11.49 6.80 -12.27 -0.08 11.41 15 11 O -0.54 -14.94 16.51 5.60 0.09 -14.85 15 12 C -0.14 -2.34 5.40 -27.79 -0.15 -2.49 15 13 C -0.12 -1.73 5.76 -26.97 -0.16 -1.89 15 14 C -0.11 -1.59 5.67 -27.96 -0.16 -1.74 15 15 C -0.14 -2.57 5.36 -28.64 -0.15 -2.72 15 16 C 0.52 12.82 5.61 -11.11 -0.06 12.76 15 17 O -0.49 -13.92 14.93 5.61 0.08 -13.83 15 18 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15 19 H 0.09 1.37 6.38 -51.93 -0.33 1.04 15 20 H 0.09 1.38 8.10 -51.93 -0.42 0.96 15 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.07 1.11 7.90 -51.93 -0.41 0.70 15 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.09 1.56 8.13 -51.93 -0.42 1.14 15 26 H 0.08 1.39 6.41 -51.93 -0.33 1.06 15 LS Contribution 221.01 15.07 3.33 3.33 Total: -1.00 -34.86 221.01 -4.72 -39.58 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -2.73 Total: -2.65 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.96 Total: 6.59 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.48 Total: -35.67 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: 0.18 Total: -28.69 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -34.86 -4.72 -39.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035328134.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.808 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds