Wall clock time and date at job start Mon Mar 30 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34781 * 116.99323 * 2 1 4 4 O 1.21516 * 120.00531 * 359.72914 * 3 2 1 5 5 C 1.47386 * 119.99686 * 180.02562 * 3 2 1 6 6 N 1.32316 * 127.70820 * 359.40782 * 5 3 2 7 7 N 1.28321 * 109.29105 * 179.86704 * 6 5 3 8 8 H 0.96998 * 123.59212 * 180.15069 * 7 6 5 9 9 N 1.28372 * 112.80981 * 0.43061 * 7 6 5 10 10 C 1.33258 * 108.90110 * 359.73816 * 9 7 6 11 11 C 1.41268 * 127.79496 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00281 * 180.02562 * 11 10 9 13 13 C 1.40052 * 119.99661 * 0.05147 * 11 10 9 14 14 N 1.30756 * 119.99819 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99937 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46885 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47076 * 119.99631 * 15 13 11 18 18 H 1.48501 * 109.47081 * 239.99787 * 15 13 11 19 19 H 1.09001 * 109.47466 * 59.99900 * 1 2 3 20 20 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47280 * 299.99446 * 1 2 3 22 22 H 0.97007 * 119.99738 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4019 2.2201 -0.0050 5 6 3.5356 1.2782 -0.0006 6 7 4.3986 0.2753 0.0097 7 7 5.5932 0.7439 0.0023 8 1 6.3879 0.1877 0.0054 9 7 5.6243 2.0272 -0.0038 10 6 4.3745 2.4894 -0.0062 11 6 3.9496 3.8366 -0.0122 12 1 2.8952 4.0703 -0.0132 13 6 4.8957 4.8692 -0.0174 14 7 6.1723 4.5861 -0.0162 15 14 4.3340 6.6507 -0.0261 16 1 2.8499 6.7016 -0.0267 17 1 4.8529 7.3392 1.1831 18 1 4.8526 7.3273 -1.2419 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 6.8277 5.3014 -0.0195 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039058548.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:24 Heat of formation + Delta-G solvation = 3.216003 kcal Electronic energy + Delta-G solvation = -12117.723608 eV Core-core repulsion = 9675.307136 eV Total energy + Delta-G solvation = -2442.416472 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.44043 -39.19600 -35.51970 -33.76865 -31.01423 -30.50292 -27.41495 -26.13750 -23.45869 -20.93932 -19.68613 -17.22114 -16.80624 -16.21988 -15.70378 -15.65116 -14.80580 -14.49924 -13.14783 -12.99630 -12.52014 -11.79357 -11.57079 -11.28124 -10.87609 -10.34111 -10.14958 -9.93230 -9.65263 -9.58692 -8.94263 -8.67725 -8.02296 -6.65792 -4.52851 2.31093 3.03312 3.14752 3.23496 3.37581 3.76845 4.00530 4.17452 4.28728 5.33035 5.50642 5.58255 5.60480 5.84405 6.24292 6.78116 7.10186 7.26123 7.42142 8.22690 8.45033 8.60538 8.76392 8.87905 9.99458 10.31255 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.013019 C = 0.009800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.425066 B = 2150.240060 C = 2856.518504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.359 6.359 3 C 0.563 3.437 4 O -0.512 6.512 5 C -0.142 4.142 6 N -0.258 5.258 7 N -0.249 5.249 8 H 0.449 0.551 9 N -0.351 5.351 10 C 0.219 3.781 11 C -0.411 4.411 12 H 0.105 0.895 13 C 0.068 3.932 14 N -0.758 5.758 15 Si 0.918 3.082 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.274 1.274 19 H 0.057 0.943 20 H 0.092 0.908 21 H 0.057 0.943 22 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -3.901 0.014 5.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.408 3.592 4 O -0.399 6.399 5 C -0.301 4.301 6 N -0.115 5.115 7 N -0.079 5.079 8 H 0.296 0.704 9 N -0.202 5.202 10 C 0.072 3.928 11 C -0.449 4.449 12 H 0.123 0.877 13 C -0.154 4.154 14 N -0.383 5.383 15 Si 0.742 3.258 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.199 1.199 19 H 0.076 0.924 20 H 0.110 0.890 21 H 0.076 0.924 22 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.061 -4.217 0.017 5.211 hybrid contribution -0.578 0.965 -0.002 1.125 sum -3.639 -3.252 0.015 4.880 Atomic orbital electron populations 1.23096 0.77843 1.02577 1.02068 1.86651 1.21916 1.33619 1.85363 1.19353 0.86245 0.80743 0.72836 1.90771 1.65528 1.35784 1.47794 1.22415 0.89982 0.91907 1.25810 1.73621 0.92825 1.28187 1.16881 1.45636 1.05103 1.05565 1.51553 0.70418 1.75499 1.21073 0.89540 1.34071 1.21223 0.84709 0.93076 0.93771 1.19063 0.95474 0.86553 1.43782 0.87666 1.26024 0.94465 1.01860 0.93067 1.69910 1.01303 1.34656 1.32475 0.86083 0.80514 0.80863 0.78351 1.18009 1.19907 1.19910 0.92416 0.88958 0.92417 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.57 101.05 1.07 1.64 14 2 O -0.36 -7.29 10.58 -40.71 -0.43 -7.72 14 3 C 0.56 13.50 7.96 34.45 0.27 13.77 14 4 O -0.51 -12.92 15.29 -19.28 -0.29 -13.22 14 5 C -0.14 -3.70 7.50 -80.24 -0.60 -4.30 14 6 N -0.26 -6.13 12.31 34.67 0.43 -5.70 14 7 N -0.25 -5.62 7.65 60.35 0.46 -5.16 14 8 H 0.45 7.80 8.96 -340.21 -3.05 4.76 14 9 N -0.35 -9.42 10.72 33.51 0.36 -9.06 14 10 C 0.22 6.18 7.04 -82.40 -0.58 5.60 14 11 C -0.41 -11.53 9.13 -37.75 -0.34 -11.87 14 12 H 0.11 2.94 6.60 -52.49 -0.35 2.59 14 13 C 0.07 1.78 5.50 -17.33 -0.10 1.69 14 14 N -0.76 -20.30 12.05 55.55 0.67 -19.63 14 15 Si 0.92 19.39 29.56 -169.99 -5.02 14.36 14 16 H -0.26 -5.42 7.11 56.52 0.40 -5.02 14 17 H -0.27 -5.63 7.11 56.52 0.40 -5.22 14 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 14 20 H 0.09 1.01 8.14 -51.93 -0.42 0.59 14 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 14 22 H 0.28 6.69 8.29 -40.82 -0.34 6.35 14 LS Contribution 215.44 15.07 3.25 3.25 Total: -1.00 -32.07 215.44 -4.66 -36.73 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.80 Total: -0.37 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.28 Total: 6.52 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 1.92 Total: -39.55 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.73 Total: -20.94 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -32.07 -4.66 -36.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039058548.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.945 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds