Wall clock time and date at job start Mon Mar 30 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34781 * 116.99323 * 2 1 4 4 O 1.21516 * 120.00531 * 359.72914 * 3 2 1 5 5 C 1.47386 * 119.99686 * 180.02562 * 3 2 1 6 6 N 1.32316 * 127.70820 * 359.40782 * 5 3 2 7 7 N 1.28321 * 109.29105 * 179.86704 * 6 5 3 8 8 H 0.96998 * 123.59212 * 180.15069 * 7 6 5 9 9 N 1.28372 * 112.80981 * 0.43061 * 7 6 5 10 10 C 1.33258 * 108.90110 * 359.73816 * 9 7 6 11 11 C 1.41268 * 127.79496 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00281 * 180.02562 * 11 10 9 13 13 C 1.40052 * 119.99661 * 0.05147 * 11 10 9 14 14 N 1.30756 * 119.99819 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99937 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46885 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47076 * 119.99631 * 15 13 11 18 18 H 1.48501 * 109.47081 * 239.99787 * 15 13 11 19 19 H 1.09001 * 109.47466 * 59.99900 * 1 2 3 20 20 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47280 * 299.99446 * 1 2 3 22 22 H 0.97007 * 119.99738 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4019 2.2201 -0.0050 5 6 3.5356 1.2782 -0.0006 6 7 4.3986 0.2753 0.0097 7 7 5.5932 0.7439 0.0023 8 1 6.3879 0.1877 0.0054 9 7 5.6243 2.0272 -0.0038 10 6 4.3745 2.4894 -0.0062 11 6 3.9496 3.8366 -0.0122 12 1 2.8952 4.0703 -0.0132 13 6 4.8957 4.8692 -0.0174 14 7 6.1723 4.5861 -0.0162 15 14 4.3340 6.6507 -0.0261 16 1 2.8499 6.7016 -0.0267 17 1 4.8529 7.3392 1.1831 18 1 4.8526 7.3273 -1.2419 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 6.8277 5.3014 -0.0195 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039058548.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:24 Heat of formation + Delta-G solvation = -20.656056 kcal Electronic energy + Delta-G solvation = -12118.758778 eV Core-core repulsion = 9675.307136 eV Total energy + Delta-G solvation = -2443.451642 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.39082 -40.92904 -37.24820 -35.75148 -32.94469 -32.50474 -28.87986 -28.07112 -25.24197 -22.91777 -21.49469 -19.13424 -18.76545 -18.06886 -17.39859 -17.33639 -16.64750 -16.34898 -14.96595 -14.55388 -14.08530 -13.68955 -12.99120 -12.95711 -12.79058 -12.15815 -11.79604 -11.67488 -11.53888 -11.48949 -10.94445 -10.63723 -10.00887 -8.60329 -6.59376 0.42072 1.33119 1.43645 1.60648 1.74793 1.83626 2.25319 2.26132 2.61115 3.28173 3.76851 4.34152 4.41624 4.41688 4.70126 4.92302 5.20422 5.40498 5.42758 6.31033 6.43371 6.66806 6.87870 6.95932 8.00010 8.39003 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.013019 C = 0.009800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.425066 B = 2150.240060 C = 2856.518504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.566 3.434 4 O -0.533 6.533 5 C -0.171 4.171 6 N -0.241 5.241 7 N -0.229 5.229 8 H 0.469 0.531 9 N -0.371 5.371 10 C 0.188 3.812 11 C -0.444 4.444 12 H 0.095 0.905 13 C 0.027 3.973 14 N -0.787 5.787 15 Si 0.994 3.006 16 H -0.260 1.260 17 H -0.261 1.261 18 H -0.261 1.261 19 H 0.061 0.939 20 H 0.137 0.863 21 H 0.062 0.938 22 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -3.831 0.013 5.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.412 3.588 4 O -0.422 6.422 5 C -0.328 4.328 6 N -0.099 5.099 7 N -0.063 5.063 8 H 0.321 0.679 9 N -0.222 5.222 10 C 0.041 3.959 11 C -0.481 4.481 12 H 0.113 0.887 13 C -0.192 4.192 14 N -0.413 5.413 15 Si 0.814 3.186 16 H -0.184 1.184 17 H -0.185 1.185 18 H -0.185 1.185 19 H 0.080 0.920 20 H 0.155 0.845 21 H 0.080 0.920 22 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.504 -4.199 0.016 5.469 hybrid contribution -0.445 0.782 -0.001 0.900 sum -3.949 -3.417 0.015 5.223 Atomic orbital electron populations 1.23580 0.74516 1.05727 1.02564 1.86610 1.25074 1.31365 1.84567 1.19159 0.85733 0.81493 0.72426 1.90744 1.65842 1.36757 1.48877 1.22718 0.91498 0.91574 1.27024 1.73571 0.92835 1.27385 1.16064 1.45727 1.05790 1.04912 1.49889 0.67919 1.75392 1.21045 0.91146 1.34662 1.21588 0.85740 0.94109 0.94452 1.19259 0.95597 0.87606 1.45628 0.88658 1.26925 0.94255 1.06112 0.91929 1.69943 1.02376 1.36677 1.32323 0.84969 0.79661 0.74831 0.79163 1.18379 1.18535 1.18546 0.91980 0.84472 0.91966 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.57 113.37 1.20 1.99 14 2 O -0.36 -14.12 10.58 -56.92 -0.60 -14.72 14 3 C 0.57 27.09 7.96 70.23 0.56 27.65 14 4 O -0.53 -27.10 15.29 19.78 0.30 -26.80 14 5 C -0.17 -8.90 7.50 43.87 0.33 -8.57 14 6 N -0.24 -11.27 12.31 -44.22 -0.54 -11.82 14 7 N -0.23 -10.19 7.65 37.02 0.28 -9.91 14 8 H 0.47 15.75 8.96 -347.40 -3.11 12.64 14 9 N -0.37 -20.00 10.72 -47.88 -0.51 -20.51 14 10 C 0.19 10.74 7.04 42.07 0.30 11.04 14 11 C -0.44 -25.29 9.13 23.46 0.21 -25.08 14 12 H 0.10 5.46 6.60 -2.91 -0.02 5.45 14 13 C 0.03 1.43 5.50 85.29 0.47 1.90 14 14 N -0.79 -42.10 12.05 21.84 0.26 -41.83 14 15 Si 0.99 39.42 29.56 68.60 2.03 41.45 14 16 H -0.26 -10.35 7.11 99.48 0.71 -9.64 14 17 H -0.26 -9.74 7.11 99.48 0.71 -9.03 14 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 14 19 H 0.06 1.65 8.14 -2.39 -0.02 1.63 14 20 H 0.14 2.50 8.14 -2.39 -0.02 2.48 14 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 14 22 H 0.29 13.74 8.29 -92.70 -0.77 12.97 14 Total: -1.00 -68.58 215.44 2.44 -66.13 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -1.84 Total: 9.08 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 3.07 Total: 8.93 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -0.51 Total: -84.07 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.30 Total: -41.52 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -68.58 2.44 -66.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039058548.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.479 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds