Wall clock time and date at job start Mon Mar 30 2020 01:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48500 * 109.47122 * 269.99901 * 3 2 1 5 5 H 1.48505 * 109.47027 * 29.99826 * 3 2 1 6 6 H 1.48498 * 109.47263 * 149.99660 * 3 2 1 7 7 C 1.37878 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00356 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.35046 * 126.39464 * 264.95737 * 10 9 7 12 12 N 1.30499 * 108.69457 * 180.02562 * 11 10 9 13 13 C 1.34128 * 109.26095 * 0.02562 * 12 11 10 14 14 C 1.34675 * 108.01655 * 0.02562 * 13 12 11 15 15 N 1.48037 * 126.58786 * 180.02562 * 14 13 12 16 16 O 1.21794 * 120.00199 * 359.97438 * 15 14 13 17 17 O 1.21799 * 119.99778 * 179.97438 * 15 14 13 18 18 H 0.97000 * 119.99384 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.46995 * 59.99804 * 9 7 2 20 20 H 1.08993 * 109.47045 * 300.00324 * 9 7 2 21 21 H 1.08000 * 125.65577 * 0.02562 * 11 10 9 22 22 H 1.08002 * 125.99300 * 180.26028 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5755 0.0022 11 6 4.3564 -3.2984 1.0857 12 7 4.7385 -4.4822 0.6914 13 6 4.6410 -4.5565 -0.6443 14 6 4.1815 -3.3735 -1.0948 15 7 3.9209 -3.0074 -2.5054 16 8 4.1245 -3.8169 -3.3923 17 8 3.5028 -1.8966 -2.7789 18 1 -0.4849 0.8401 0.0004 19 1 3.8745 -0.6802 0.8911 20 1 3.8751 -0.6806 -0.8888 21 1 4.3299 -2.9539 2.1089 22 1 4.8844 -5.4158 -1.2516 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039241007.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:47 Heat of formation + Delta-G solvation = 60.313333 kcal Electronic energy + Delta-G solvation = -12309.299599 eV Core-core repulsion = 9869.359054 eV Total energy + Delta-G solvation = -2439.940546 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.44486 -41.10465 -36.12306 -34.45427 -32.46313 -30.52172 -28.27765 -25.74216 -23.22832 -21.53268 -20.98413 -18.25671 -17.92733 -17.58519 -16.95395 -16.19606 -14.95951 -14.43876 -13.88505 -13.60715 -12.72484 -12.59246 -11.58388 -11.13649 -11.07187 -10.69741 -10.64898 -10.60686 -10.18939 -9.96277 -9.38634 -8.92431 -8.81118 -6.42232 -4.49974 0.60727 1.55474 2.32615 2.98646 3.06317 3.09728 3.14911 3.23389 4.09217 4.60716 4.84815 4.99643 5.25219 5.59365 6.05663 6.18591 6.55108 6.75014 7.01308 7.18114 7.75980 8.03588 8.19596 8.53825 9.10454 10.69715 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.039586 B = 0.013555 C = 0.011567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.146048 B = 2065.159021 C = 2420.194351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.089 3.911 3 Si 0.877 3.123 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.192 3.808 10 N -0.396 5.396 11 C 0.244 3.756 12 N -0.498 5.498 13 C 0.077 3.923 14 C 0.009 3.991 15 N 0.068 4.932 16 O -0.175 6.175 17 O -0.136 6.136 18 H 0.272 0.728 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.224 0.776 22 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 -2.667 1.044 9.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.118 4.118 3 Si 0.702 3.298 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.097 0.903 9 C 0.073 3.927 10 N -0.075 5.075 11 C -0.040 4.040 12 N -0.217 5.217 13 C -0.082 4.082 14 C -0.191 4.191 15 N 0.585 4.415 16 O -0.381 6.381 17 O -0.356 6.356 18 H 0.083 0.917 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.241 0.759 22 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.680 -3.145 2.172 9.484 hybrid contribution -0.204 1.709 -0.843 1.916 sum 8.475 -1.436 1.329 8.698 Atomic orbital electron populations 1.69850 1.06255 1.27850 1.47379 1.24734 0.94820 0.98960 0.93256 0.86849 0.79985 0.83401 0.79550 1.18981 1.20380 1.19074 1.20851 0.86812 0.95778 1.55399 0.90318 1.20654 0.98183 0.73467 1.00429 1.45743 1.42610 1.15028 1.04099 1.25260 0.97692 0.87155 0.93846 1.70636 1.22792 1.18704 1.09587 1.22313 0.99250 0.94905 0.91732 1.21699 1.21191 0.95873 0.80296 1.42278 0.97923 1.00558 1.00706 1.94496 1.57416 1.47497 1.38708 1.94647 1.45328 1.07366 1.88227 0.91742 0.92329 0.92032 0.75931 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.96 55.43 0.77 -24.52 14 2 C 0.09 2.37 5.47 -17.82 -0.10 2.27 14 3 Si 0.88 19.45 27.47 -169.99 -4.67 14.78 14 4 H -0.26 -5.92 7.11 56.52 0.40 -5.52 14 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 6 H -0.27 -5.42 6.54 56.52 0.37 -5.05 14 7 C -0.55 -14.54 9.94 -34.44 -0.34 -14.88 14 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 14 9 C 0.19 4.16 4.32 -5.19 -0.02 4.14 14 10 N -0.40 -7.84 2.73 -116.27 -0.32 -8.16 14 11 C 0.24 4.04 12.56 -90.37 -1.13 2.90 14 12 N -0.50 -8.43 11.25 -14.66 -0.16 -8.59 14 13 C 0.08 1.30 11.58 -17.81 -0.21 1.10 14 14 C 0.01 0.18 7.96 -143.12 -1.14 -0.96 14 15 N 0.07 1.43 4.45 33.10 0.15 1.58 14 16 O -0.17 -3.47 19.04 -29.46 -0.56 -4.03 14 17 O -0.14 -3.15 17.09 -29.46 -0.50 -3.65 14 18 H 0.27 7.27 8.31 -40.82 -0.34 6.93 14 19 H 0.06 1.15 7.19 -51.93 -0.37 0.77 14 20 H 0.06 1.38 6.15 -51.93 -0.32 1.06 14 21 H 0.22 2.71 8.06 -52.49 -0.42 2.29 14 22 H 0.19 2.59 8.06 -52.49 -0.42 2.17 14 LS Contribution 214.39 15.07 3.23 3.23 Total: -1.00 -29.78 214.39 -6.13 -35.92 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -1.13 Total: -1.13 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.94 Total: -5.43 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.44 Total: -39.69 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -1.06 Total: -7.68 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.67 Total: 14.78 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.78 -6.13 -35.92 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039241007.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.231 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds