Wall clock time and date at job start Mon Mar 30 2020 01:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00452 * 2 1 4 4 H 1.48500 * 109.47122 * 269.99901 * 3 2 1 5 5 H 1.48505 * 109.47027 * 29.99826 * 3 2 1 6 6 H 1.48498 * 109.47263 * 149.99660 * 3 2 1 7 7 C 1.37878 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99735 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00356 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.35046 * 126.39464 * 264.95737 * 10 9 7 12 12 N 1.30499 * 108.69457 * 180.02562 * 11 10 9 13 13 C 1.34128 * 109.26095 * 0.02562 * 12 11 10 14 14 C 1.34675 * 108.01655 * 0.02562 * 13 12 11 15 15 N 1.48037 * 126.58786 * 180.02562 * 14 13 12 16 16 O 1.21794 * 120.00199 * 359.97438 * 15 14 13 17 17 O 1.21799 * 119.99778 * 179.97438 * 15 14 13 18 18 H 0.97000 * 119.99384 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.46995 * 59.99804 * 9 7 2 20 20 H 1.08993 * 109.47045 * 300.00324 * 9 7 2 21 21 H 1.08000 * 125.65577 * 0.02562 * 11 10 9 22 22 H 1.08002 * 125.99300 * 180.26028 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5755 0.0022 11 6 4.3564 -3.2984 1.0857 12 7 4.7385 -4.4822 0.6914 13 6 4.6410 -4.5565 -0.6443 14 6 4.1815 -3.3735 -1.0948 15 7 3.9209 -3.0074 -2.5054 16 8 4.1245 -3.8169 -3.3923 17 8 3.5028 -1.8966 -2.7789 18 1 -0.4849 0.8401 0.0004 19 1 3.8745 -0.6802 0.8911 20 1 3.8751 -0.6806 -0.8888 21 1 4.3299 -2.9539 2.1089 22 1 4.8844 -5.4158 -1.2516 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039241007.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:47 Heat of formation + Delta-G solvation = 42.532981 kcal Electronic energy + Delta-G solvation = -12310.070613 eV Core-core repulsion = 9869.359054 eV Total energy + Delta-G solvation = -2440.711560 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.90887 -42.66982 -37.74008 -36.13998 -34.33160 -32.00191 -30.06253 -27.27172 -25.05811 -22.93967 -22.52946 -19.85878 -19.51461 -19.47330 -18.65773 -17.66752 -16.60358 -16.08258 -15.42384 -14.94488 -14.60110 -14.22474 -13.38231 -12.80905 -12.76156 -12.34449 -12.31192 -12.28426 -11.88352 -11.61583 -10.99942 -10.92574 -10.27223 -8.46696 -6.59979 -0.96218 0.07132 0.83826 1.31162 1.38489 1.42478 1.62783 1.69407 2.22911 2.88017 3.35786 3.61281 3.85082 4.18003 4.41046 4.70037 4.93293 5.11610 5.26308 5.66417 6.02334 6.33322 6.41448 6.59862 7.04980 8.69675 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.039586 B = 0.013555 C = 0.011567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.146048 B = 2065.159021 C = 2420.194351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.028 3.972 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.227 1.227 7 C -0.552 4.552 8 H 0.025 0.975 9 C 0.202 3.798 10 N -0.419 5.419 11 C 0.265 3.735 12 N -0.502 5.502 13 C 0.105 3.895 14 C -0.028 4.028 15 N 0.069 4.931 16 O -0.135 6.135 17 O -0.214 6.214 18 H 0.275 0.725 19 H 0.093 0.907 20 H 0.055 0.945 21 H 0.267 0.733 22 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -2.925 2.212 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.150 1.150 7 C -0.590 4.590 8 H 0.044 0.956 9 C 0.082 3.918 10 N -0.099 5.099 11 C -0.018 4.018 12 N -0.221 5.221 13 C -0.054 4.054 14 C -0.227 4.227 15 N 0.582 4.418 16 O -0.355 6.355 17 O -0.414 6.414 18 H 0.084 0.916 19 H 0.111 0.889 20 H 0.073 0.927 21 H 0.282 0.718 22 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 10.889 -3.281 3.364 11.860 hybrid contribution -0.866 1.463 -1.186 2.073 sum 10.023 -1.817 2.178 10.417 Atomic orbital electron populations 1.70009 1.08507 1.29092 1.49527 1.25755 0.95603 1.03324 0.92588 0.85735 0.80096 0.77776 0.79552 1.19598 1.19974 1.14996 1.20980 0.89571 0.93706 1.54738 0.95649 1.20368 0.94782 0.75181 1.01454 1.45729 1.44288 1.14802 1.05040 1.26286 0.94452 0.86379 0.94670 1.70780 1.23324 1.18724 1.09305 1.22980 0.96006 0.94447 0.91988 1.22013 1.23939 0.97211 0.79511 1.42478 0.97460 1.00246 1.01614 1.94434 1.54883 1.46715 1.39500 1.94661 1.49355 1.08552 1.88869 0.91603 0.88887 0.92713 0.71779 0.75817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.96 21.45 0.30 -55.34 14 2 C 0.03 1.53 5.47 84.65 0.46 1.99 14 3 Si 0.95 39.60 27.47 68.60 1.88 41.49 14 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 14 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 14 6 H -0.23 -8.03 6.54 99.48 0.65 -7.37 14 7 C -0.55 -29.68 9.94 25.60 0.25 -29.43 14 8 H 0.03 1.59 8.06 -2.91 -0.02 1.56 14 9 C 0.20 8.52 4.32 85.63 0.37 8.89 14 10 N -0.42 -15.84 2.73 -521.75 -1.43 -17.27 14 11 C 0.26 7.84 12.56 180.26 2.26 10.10 14 12 N -0.50 -15.19 11.25 -200.30 -2.25 -17.44 14 13 C 0.10 3.23 11.58 83.52 0.97 4.20 14 14 C -0.03 -1.09 7.96 127.31 1.01 -0.07 14 15 N 0.07 2.93 4.45 -49.18 -0.22 2.71 14 16 O -0.14 -5.21 19.04 18.89 0.36 -4.85 14 17 O -0.21 -10.26 17.09 18.89 0.32 -9.94 14 18 H 0.27 15.15 8.31 -92.71 -0.77 14.38 14 19 H 0.09 3.29 7.19 -2.39 -0.02 3.27 14 20 H 0.05 2.41 6.15 -2.39 -0.01 2.40 14 21 H 0.27 5.16 8.06 -2.91 -0.02 5.13 14 22 H 0.23 5.16 8.06 -2.91 -0.02 5.14 14 Total: -1.00 -67.26 214.39 5.49 -61.77 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.19 Total: 3.18 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.33 Total: -4.32 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -3.60 Total: -87.33 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.68 Total: -14.79 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.88 Total: 41.49 kcal Total: -67.26 5.49 -61.77 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039241007.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.301 kcal (2) G-P(sol) polarization free energy of solvation -67.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds