Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47293 * 2 1 4 4 C 1.50705 * 109.46816 * 119.99721 * 2 1 3 5 5 H 1.08005 * 119.99594 * 119.99851 * 4 2 1 6 6 C 1.37875 * 120.00173 * 299.99971 * 4 2 1 7 7 N 1.31511 * 120.00118 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99862 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46989 * 60.00126 * 8 6 4 10 10 H 1.48497 * 109.47134 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47183 * 299.99963 * 8 6 4 12 12 N 1.46497 * 109.47149 * 239.99679 * 2 1 3 13 13 C 1.33879 * 122.76265 * 120.00307 * 12 2 1 14 14 O 1.21233 * 125.39135 * 359.97435 * 13 12 2 15 15 C 1.51312 * 109.20866 * 180.24223 * 13 12 2 16 16 C 1.54228 * 103.55616 * 359.63118 * 15 13 12 17 17 C 1.33875 * 122.76728 * 299.99965 * 12 2 1 18 18 O 1.21230 * 125.39221 * 0.02562 * 17 12 2 19 19 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47428 * 300.00275 * 1 2 3 21 21 H 1.09006 * 109.47300 * 60.00256 * 1 2 3 22 22 H 0.97000 * 120.00576 * 179.97438 * 7 6 4 23 23 H 1.09004 * 110.60416 * 118.27645 * 15 13 12 24 24 H 1.08993 * 110.60499 * 241.24048 * 15 13 12 25 25 H 1.08994 * 110.80706 * 241.73088 * 16 15 13 26 26 H 1.08998 * 110.53952 * 118.82350 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1189 4.0078 10 1 1.8268 -0.4199 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0183 -0.6907 -1.1961 13 6 2.7906 -0.0941 -2.1126 14 8 3.1703 1.0564 -2.0694 15 6 3.1088 -1.0813 -3.2143 16 6 2.3867 -2.3683 -2.7661 17 6 1.7292 -1.9703 -1.4627 18 8 1.0480 -2.6953 -0.7698 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 0.7080 1.1610 3.4844 23 1 2.7156 -0.7310 -4.1687 24 1 4.1836 -1.2498 -3.2797 25 1 3.1001 -3.1764 -2.6048 26 1 1.6364 -2.6614 -3.5004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = -69.458830 kcal Electronic energy + Delta-G solvation = -12802.262486 eV Core-core repulsion = 10460.234940 eV Total energy + Delta-G solvation = -2342.027546 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.04073 -37.75101 -35.12522 -34.32090 -31.93772 -28.84471 -25.63949 -25.25847 -22.12784 -21.42837 -18.52886 -16.85751 -16.24617 -16.01616 -15.34190 -14.59379 -13.65123 -13.55000 -13.38428 -13.32527 -12.63165 -12.49064 -11.66902 -11.23890 -11.08658 -10.93645 -10.83092 -10.50945 -10.21071 -9.70559 -9.51060 -9.10080 -8.49217 -8.40950 -6.10749 -4.17422 2.19187 3.30936 3.34191 3.35886 3.48165 3.54746 4.38799 4.54028 4.76882 4.87567 5.11726 5.22433 5.62578 5.82336 5.89056 6.48549 6.68653 6.89664 6.92872 7.33380 7.61874 7.87251 7.95963 8.11407 8.24743 8.60332 8.84013 9.47584 10.95731 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043529 B = 0.012813 C = 0.011935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.089433 B = 2184.807745 C = 2345.450044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.251 3.749 3 H 0.064 0.936 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.555 5.555 13 C 0.519 3.481 14 O -0.499 6.499 15 C -0.159 4.159 16 C -0.162 4.162 17 C 0.522 3.478 18 O -0.472 6.472 19 H 0.047 0.953 20 H 0.099 0.901 21 H 0.010 0.990 22 H 0.265 0.735 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 -4.681 -9.717 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.153 3.847 3 H 0.081 0.919 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.732 3.268 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.295 5.295 13 C 0.308 3.692 14 O -0.373 6.373 15 C -0.199 4.199 16 C -0.202 4.202 17 C 0.309 3.691 18 O -0.344 6.344 19 H 0.066 0.934 20 H 0.117 0.883 21 H 0.029 0.971 22 H 0.075 0.925 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.227 -4.312 -9.115 10.327 hybrid contribution 0.311 -0.426 0.853 1.002 sum 2.538 -4.738 -8.263 9.857 Atomic orbital electron populations 1.22117 0.96992 1.01034 1.00947 1.19255 0.92197 0.93804 0.79476 0.91863 1.21093 1.32155 1.12685 0.89857 0.92250 1.24847 0.94834 0.94952 0.99037 1.69852 1.36229 1.22654 1.24094 0.86448 0.79092 0.79798 0.81498 1.20195 1.21047 1.20009 1.47183 1.44809 1.13538 1.24018 1.20659 0.77188 0.87805 0.83590 1.90705 1.52217 1.17210 1.77192 1.22447 1.03716 0.94336 0.99396 1.22489 1.01749 0.99019 0.96975 1.20505 0.80035 0.81705 0.86862 1.90715 1.35750 1.54843 1.53066 0.93413 0.88301 0.97106 0.92486 0.87152 0.87113 0.87135 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.95 37.16 0.33 -3.53 15 2 C 0.25 6.59 2.69 -69.08 -0.19 6.40 15 3 H 0.06 1.82 7.41 -51.93 -0.38 1.44 15 4 C -0.52 -14.73 7.96 -34.44 -0.27 -15.01 15 5 H 0.06 1.70 7.65 -52.48 -0.40 1.30 15 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 15 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 15 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 15 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 12 N -0.55 -12.10 2.47 -109.49 -0.27 -12.37 15 13 C 0.52 9.96 8.08 -11.09 -0.09 9.87 15 14 O -0.50 -11.26 17.23 5.60 0.10 -11.16 15 15 C -0.16 -1.93 7.03 -26.94 -0.19 -2.12 15 16 C -0.16 -2.01 7.03 -26.94 -0.19 -2.20 15 17 C 0.52 10.24 7.31 -11.09 -0.08 10.16 15 18 O -0.47 -11.00 15.72 5.60 0.09 -10.92 15 19 H 0.05 1.22 6.64 -51.93 -0.34 0.87 15 20 H 0.10 2.69 6.07 -51.93 -0.32 2.37 15 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 22 H 0.27 7.24 8.31 -40.82 -0.34 6.90 15 23 H 0.11 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.11 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.11 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.11 1.07 8.14 -51.93 -0.42 0.64 15 LS Contribution 228.72 15.07 3.45 3.45 Total: -1.00 -32.69 228.72 -4.50 -37.19 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -2.69 Total: -3.44 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.77 Total: 5.35 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.36 Total: -37.34 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.18 Total: -22.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -32.69 -4.50 -37.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.265 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds