Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47293 * 2 1 4 4 C 1.50705 * 109.46816 * 119.99721 * 2 1 3 5 5 H 1.08005 * 119.99594 * 119.99851 * 4 2 1 6 6 C 1.37875 * 120.00173 * 299.99971 * 4 2 1 7 7 N 1.31511 * 120.00118 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99862 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46989 * 60.00126 * 8 6 4 10 10 H 1.48497 * 109.47134 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47183 * 299.99963 * 8 6 4 12 12 N 1.46497 * 109.47149 * 239.99679 * 2 1 3 13 13 C 1.33879 * 122.76265 * 120.00307 * 12 2 1 14 14 O 1.21233 * 125.39135 * 359.97435 * 13 12 2 15 15 C 1.51312 * 109.20866 * 180.24223 * 13 12 2 16 16 C 1.54228 * 103.55616 * 359.63118 * 15 13 12 17 17 C 1.33875 * 122.76728 * 299.99965 * 12 2 1 18 18 O 1.21230 * 125.39221 * 0.02562 * 17 12 2 19 19 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47428 * 300.00275 * 1 2 3 21 21 H 1.09006 * 109.47300 * 60.00256 * 1 2 3 22 22 H 0.97000 * 120.00576 * 179.97438 * 7 6 4 23 23 H 1.09004 * 110.60416 * 118.27645 * 15 13 12 24 24 H 1.08993 * 110.60499 * 241.24048 * 15 13 12 25 25 H 1.08994 * 110.80706 * 241.73088 * 16 15 13 26 26 H 1.08998 * 110.53952 * 118.82350 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1189 4.0078 10 1 1.8268 -0.4199 5.2205 11 1 1.8279 -2.5197 4.0083 12 7 2.0183 -0.6907 -1.1961 13 6 2.7906 -0.0941 -2.1126 14 8 3.1703 1.0564 -2.0694 15 6 3.1088 -1.0813 -3.2143 16 6 2.3867 -2.3683 -2.7661 17 6 1.7292 -1.9703 -1.4627 18 8 1.0480 -2.6953 -0.7698 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 0.7080 1.1610 3.4844 23 1 2.7156 -0.7310 -4.1687 24 1 4.1836 -1.2498 -3.2797 25 1 3.1001 -3.1764 -2.6048 26 1 1.6364 -2.6614 -3.5004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = -93.103691 kcal Electronic energy + Delta-G solvation = -12803.287804 eV Core-core repulsion = 10460.234940 eV Total energy + Delta-G solvation = -2343.052864 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.55845 -39.35471 -36.86347 -36.05921 -33.71506 -30.63493 -27.43764 -26.90209 -23.93095 -22.89133 -20.17510 -18.73227 -17.91696 -17.52729 -17.02182 -16.46761 -15.35551 -15.07332 -14.86291 -14.70195 -14.42805 -13.90058 -13.57570 -13.10110 -12.91639 -12.79586 -12.47002 -12.26283 -11.98166 -11.60348 -11.19936 -10.81168 -10.54504 -10.32908 -8.26025 -6.40971 0.71753 1.34951 1.38619 1.45963 1.96159 2.07343 2.36952 3.02822 3.43022 3.47951 3.82361 4.27036 4.56746 4.64598 4.78842 4.81813 4.91799 4.99117 4.99732 5.30483 5.50922 5.75837 5.94360 6.36042 6.58659 6.69548 7.04592 7.29943 8.79819 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043529 B = 0.012813 C = 0.011935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.089433 B = 2184.807745 C = 2345.450044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.251 3.749 3 H 0.025 0.975 4 C -0.538 4.538 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.274 1.274 12 N -0.574 5.574 13 C 0.505 3.495 14 O -0.545 6.545 15 C -0.133 4.133 16 C -0.137 4.137 17 C 0.506 3.494 18 O -0.521 6.521 19 H 0.039 0.961 20 H 0.075 0.925 21 H 0.028 0.972 22 H 0.269 0.731 23 H 0.151 0.849 24 H 0.145 0.855 25 H 0.143 0.857 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -6.293 -11.390 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.150 3.850 3 H 0.043 0.957 4 C -0.576 4.576 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.199 1.199 12 N -0.314 5.314 13 C 0.297 3.703 14 O -0.422 6.422 15 C -0.172 4.172 16 C -0.176 4.176 17 C 0.298 3.702 18 O -0.396 6.396 19 H 0.058 0.942 20 H 0.094 0.906 21 H 0.047 0.953 22 H 0.078 0.922 23 H 0.168 0.832 24 H 0.163 0.837 25 H 0.161 0.839 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.265 -5.937 -10.832 12.777 hybrid contribution -0.019 0.118 1.350 1.355 sum 3.246 -5.819 -9.482 11.589 Atomic orbital electron populations 1.21885 0.96746 1.00237 1.00630 1.18798 0.92398 0.92294 0.81483 0.95745 1.21302 1.32472 1.12551 0.91282 0.93278 1.25713 0.94982 0.95684 1.02020 1.69966 1.36804 1.23632 1.24884 0.85468 0.78820 0.78519 0.78026 1.19389 1.19865 1.19925 1.47351 1.45790 1.14892 1.23388 1.22011 0.75548 0.88260 0.84466 1.90675 1.53602 1.19655 1.78316 1.22572 1.05938 0.91187 0.97528 1.22595 1.02576 0.99759 0.92692 1.21864 0.79180 0.80280 0.88907 1.90681 1.37990 1.55596 1.55334 0.94194 0.90635 0.95340 0.92229 0.83166 0.83739 0.83919 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.16 8.95 71.98 0.64 -6.51 15 2 C 0.25 13.68 2.69 44.25 0.12 13.80 15 3 H 0.02 1.50 7.41 -2.39 -0.02 1.48 15 4 C -0.54 -31.41 7.96 25.60 0.20 -31.21 15 5 H 0.05 2.88 7.65 -2.91 -0.02 2.86 15 6 C 0.02 0.92 5.30 84.65 0.45 1.37 15 7 N -0.91 -54.08 11.32 21.45 0.24 -53.84 15 8 Si 0.97 45.41 29.54 68.60 2.03 47.44 15 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 12 N -0.57 -24.98 2.47 -738.14 -1.82 -26.80 15 13 C 0.51 18.74 8.08 87.99 0.71 19.45 15 14 O -0.55 -24.80 17.23 -2.88 -0.05 -24.85 15 15 C -0.13 -2.55 7.03 30.46 0.21 -2.33 15 16 C -0.14 -2.68 7.03 30.46 0.21 -2.47 15 17 C 0.51 19.15 7.31 87.99 0.64 19.79 15 18 O -0.52 -24.25 15.72 -2.88 -0.05 -24.29 15 19 H 0.04 2.10 6.64 -2.39 -0.02 2.08 15 20 H 0.07 4.28 6.07 -2.39 -0.01 4.27 15 21 H 0.03 1.32 8.14 -2.38 -0.02 1.30 15 22 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 23 H 0.15 1.84 8.14 -2.38 -0.02 1.83 15 24 H 0.14 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.14 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.15 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -76.46 228.72 4.73 -71.72 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.18 Total: -1.26 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 3.20 Total: 11.88 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -1.58 Total: -80.64 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -76.46 4.73 -71.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.380 kcal (2) G-P(sol) polarization free energy of solvation -76.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds