Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46897 * 2 1 4 4 C 1.50695 * 109.47104 * 240.00274 * 2 1 3 5 5 H 1.08000 * 120.00280 * 240.00101 * 4 2 1 6 6 C 1.37876 * 120.00100 * 59.99772 * 4 2 1 7 7 N 1.31513 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00078 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47029 * 89.99830 * 8 6 4 10 10 H 1.48500 * 109.47072 * 209.99838 * 8 6 4 11 11 H 1.48498 * 109.47064 * 330.00331 * 8 6 4 12 12 N 1.46501 * 109.47232 * 119.99957 * 2 1 3 13 13 C 1.33878 * 122.76150 * 239.99988 * 12 2 1 14 14 O 1.21224 * 125.39650 * 359.97438 * 13 12 2 15 15 C 1.51313 * 109.20530 * 180.02562 * 13 12 2 16 16 C 1.54227 * 103.69342 * 359.92201 * 15 13 12 17 17 C 1.33871 * 122.75948 * 60.00070 * 12 2 1 18 18 O 1.21229 * 125.40167 * 0.02562 * 17 12 2 19 19 H 1.09004 * 109.46952 * 299.99446 * 1 2 3 20 20 H 1.08993 * 109.47489 * 59.99938 * 1 2 3 21 21 H 1.09000 * 109.46897 * 180.02562 * 1 2 3 22 22 H 0.97000 * 120.00289 * 179.97438 * 7 6 4 23 23 H 1.09002 * 110.60607 * 118.51938 * 15 13 12 24 24 H 1.09002 * 110.60509 * 241.32619 * 15 13 12 25 25 H 1.09007 * 110.60335 * 118.59605 * 16 15 13 26 26 H 1.09001 * 110.61059 * 241.55663 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1616 -4.4118 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 7 2.0184 -0.6906 1.1962 13 6 2.7906 -0.0939 2.1127 14 8 3.1711 1.0562 2.0690 15 6 3.1143 -1.0831 3.2110 16 6 2.3871 -2.3696 2.7697 17 6 1.7292 -1.9702 1.4627 18 8 1.0488 -2.6955 0.7694 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 0.7095 1.1619 -3.4844 23 1 4.1895 -1.2515 3.2710 24 1 2.7280 -0.7332 4.1684 25 1 3.1007 -3.1780 2.6101 26 1 1.6372 -2.6584 3.5062 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246965.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = -93.237830 kcal Electronic energy + Delta-G solvation = -12802.120507 eV Core-core repulsion = 10459.061827 eV Total energy + Delta-G solvation = -2343.058680 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.54632 -39.35243 -36.86355 -36.05386 -33.71283 -30.63757 -27.44011 -26.88486 -23.93425 -22.89011 -20.17518 -18.73230 -17.91782 -17.52661 -17.02339 -16.46341 -15.35288 -15.06956 -14.86876 -14.69672 -14.43456 -13.90085 -13.57951 -13.10185 -12.91934 -12.78473 -12.47550 -12.26857 -11.98149 -11.59398 -11.19884 -10.81042 -10.54737 -10.32749 -8.26307 -6.41109 0.71869 1.34943 1.37399 1.46799 1.95655 2.07658 2.36695 3.02599 3.42750 3.47614 3.82386 4.27089 4.56678 4.64539 4.78970 4.81724 4.91726 4.99240 4.99524 5.30530 5.50911 5.75818 5.94286 6.36059 6.58761 6.69508 7.04650 7.29882 8.79734 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043512 B = 0.012811 C = 0.011934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.346763 B = 2185.022324 C = 2345.694949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.251 3.749 3 H 0.025 0.975 4 C -0.537 4.537 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.270 1.270 12 N -0.574 5.574 13 C 0.505 3.495 14 O -0.545 6.545 15 C -0.134 4.134 16 C -0.136 4.136 17 C 0.506 3.494 18 O -0.521 6.521 19 H 0.028 0.972 20 H 0.075 0.925 21 H 0.039 0.961 22 H 0.268 0.732 23 H 0.145 0.855 24 H 0.150 0.850 25 H 0.143 0.857 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -6.310 11.402 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.150 3.850 3 H 0.043 0.957 4 C -0.575 4.575 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.792 3.208 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.194 1.194 12 N -0.314 5.314 13 C 0.297 3.703 14 O -0.422 6.422 15 C -0.173 4.173 16 C -0.175 4.175 17 C 0.297 3.703 18 O -0.396 6.396 19 H 0.047 0.953 20 H 0.094 0.906 21 H 0.058 0.942 22 H 0.078 0.922 23 H 0.162 0.838 24 H 0.168 0.832 25 H 0.161 0.839 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.264 -5.956 10.846 12.797 hybrid contribution -0.030 0.126 -1.354 1.360 sum 3.234 -5.830 9.492 11.599 Atomic orbital electron populations 1.21885 0.96744 1.00242 1.00630 1.18805 0.92400 0.92306 0.81485 0.95729 1.21325 1.32393 1.12508 0.91269 0.93284 1.25716 0.95003 0.95681 1.02028 1.69975 1.36922 1.23587 1.24810 0.85405 0.78740 0.78301 0.78313 1.19961 1.19886 1.19440 1.47342 1.45834 1.14870 1.23357 1.22000 0.75561 0.88269 0.84430 1.90672 1.53621 1.19702 1.78239 1.22572 1.05861 0.91249 0.97641 1.22661 1.02474 0.99722 0.92628 1.21960 0.79147 0.80273 0.88927 1.90677 1.37998 1.55571 1.55329 0.95335 0.90640 0.94189 0.92244 0.83758 0.83198 0.83948 0.83325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.16 8.95 71.98 0.64 -6.51 15 2 C 0.25 13.66 2.69 44.24 0.12 13.78 15 3 H 0.02 1.51 7.41 -2.39 -0.02 1.49 15 4 C -0.54 -31.34 7.95 25.60 0.20 -31.14 15 5 H 0.05 2.89 7.65 -2.91 -0.02 2.87 15 6 C 0.02 0.90 5.30 84.65 0.45 1.35 15 7 N -0.91 -54.06 11.32 21.45 0.24 -53.82 15 8 Si 0.97 45.45 29.54 68.60 2.03 47.48 15 9 H -0.27 -12.62 7.11 99.48 0.71 -11.92 15 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 12 N -0.57 -24.97 2.47 -737.68 -1.82 -26.79 15 13 C 0.51 18.76 8.08 87.99 0.71 19.47 15 14 O -0.55 -24.79 17.23 -2.86 -0.05 -24.84 15 15 C -0.13 -2.57 7.02 30.46 0.21 -2.36 15 16 C -0.14 -2.65 7.05 30.58 0.22 -2.44 15 17 C 0.51 19.12 7.32 88.11 0.64 19.76 15 18 O -0.52 -24.20 15.72 -2.87 -0.05 -24.25 15 19 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 20 H 0.07 4.28 6.07 -2.39 -0.01 4.26 15 21 H 0.04 2.10 6.64 -2.39 -0.02 2.09 15 22 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 23 H 0.14 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.15 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.14 2.03 8.14 -2.38 -0.02 2.01 15 26 H 0.15 1.90 8.14 -2.39 -0.02 1.88 15 Total: -1.00 -76.41 228.76 4.74 -71.67 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: 1.18 Total: -1.36 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 3.20 Total: 11.91 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.58 Total: -80.61 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -0.09 Total: -49.09 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.41 4.74 -71.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246965.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.571 kcal (2) G-P(sol) polarization free energy of solvation -76.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds