Wall clock time and date at job start Mon Mar 30 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.50694 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.34852 * 122.10706 * 124.99804 * 4 3 2 6 6 S 1.71044 * 109.23784 * 179.97438 * 5 4 3 7 7 C 1.76086 * 90.38831 * 359.97438 * 6 5 4 8 8 C 1.39911 * 125.54968 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99441 * 173.46214 * 8 7 6 10 10 C 1.40243 * 120.00597 * 353.45901 * 8 7 6 11 11 N 1.30698 * 119.99562 * 6.52860 * 10 8 7 12 12 Si 1.86791 * 120.00298 * 186.52876 * 10 8 7 13 13 H 1.48500 * 109.47569 * 94.98708 * 12 10 8 14 14 H 1.48503 * 109.47216 * 214.98763 * 12 10 8 15 15 H 1.48499 * 109.47353 * 334.98708 * 12 10 8 16 16 N 1.30454 * 122.10117 * 304.97391 * 4 3 2 17 17 H 1.09004 * 109.46855 * 60.00111 * 1 2 3 18 18 H 1.09001 * 109.46886 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47428 * 300.00355 * 1 2 3 20 20 H 1.08991 * 109.47098 * 239.99983 * 2 1 3 21 21 H 1.09004 * 109.46855 * 119.99889 * 2 1 3 22 22 H 1.09002 * 109.47298 * 59.99565 * 3 2 1 23 23 H 1.08995 * 109.47026 * 299.99899 * 3 2 1 24 24 H 1.07998 * 125.38222 * 0.02562 * 5 4 3 25 25 H 0.97001 * 119.99806 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2633 2.0979 -0.9366 6 16 5.9309 1.8800 -0.6248 7 6 5.5510 0.8946 0.7842 8 6 6.4870 0.2982 1.6361 9 1 6.1575 -0.2008 2.5355 10 6 7.8529 0.3484 1.3222 11 7 8.2640 1.0588 0.3051 12 14 9.0847 -0.6002 2.3576 13 1 9.3505 -1.9182 1.7271 14 1 10.3514 0.1694 2.4488 15 1 8.5314 -0.8061 3.7203 16 7 4.2406 0.8090 0.9045 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 1.8933 -0.5138 -0.8899 21 1 1.8933 -0.5138 0.8900 22 1 1.6766 1.9564 0.8900 23 1 1.6767 1.9563 -0.8900 24 1 3.8494 2.6705 -1.7534 25 1 9.2088 1.0938 0.0882 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050192905.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:58 Heat of formation + Delta-G solvation = -3.873633 kcal Electronic energy + Delta-G solvation = -10128.826181 eV Core-core repulsion = 8232.395494 eV Total energy + Delta-G solvation = -1896.430687 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.79950 -34.42986 -33.52375 -29.58063 -26.82670 -25.81146 -22.01392 -20.93091 -17.92639 -17.60479 -15.57132 -15.14069 -14.38784 -13.76992 -13.22490 -12.96431 -12.28031 -12.13593 -11.80419 -11.50565 -11.33342 -11.00762 -10.65342 -10.49597 -10.34004 -10.11948 -9.56132 -9.22478 -7.81265 -7.67141 -7.07608 -7.00131 -4.69780 2.56956 2.94700 3.01510 3.06367 3.60638 3.71668 4.10893 4.18295 5.13024 5.54270 5.59027 5.67382 5.97978 6.20214 6.32994 6.35510 6.46297 6.76821 6.81945 6.85577 6.96473 7.38371 7.68528 7.94476 8.35611 8.49832 9.80700 9.88673 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.056158 B = 0.010059 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.471520 B = 2783.021268 C = 3202.120450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.038 4.038 4 C 0.110 3.890 5 C -0.467 4.467 6 S 0.091 5.909 7 C 0.207 3.793 8 C -0.377 4.377 9 H 0.102 0.898 10 C 0.056 3.944 11 N -0.779 5.779 12 Si 0.941 3.059 13 H -0.265 1.265 14 H -0.273 1.273 15 H -0.257 1.257 16 N -0.598 5.598 17 H 0.048 0.952 18 H 0.048 0.952 19 H 0.050 0.950 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.126 0.874 25 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 -1.152 -0.111 2.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.078 4.078 4 C -0.030 4.030 5 C -0.611 4.611 6 S 0.349 5.651 7 C -0.046 4.046 8 C -0.420 4.420 9 H 0.120 0.880 10 C -0.167 4.167 11 N -0.408 5.408 12 Si 0.764 3.236 13 H -0.190 1.190 14 H -0.198 1.198 15 H -0.180 1.180 16 N -0.320 5.320 17 H 0.067 0.933 18 H 0.067 0.933 19 H 0.069 0.931 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.144 0.856 25 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.724 -1.001 -0.336 2.022 hybrid contribution -0.417 -0.218 0.141 0.491 sum -2.142 -1.218 -0.195 2.471 Atomic orbital electron populations 1.21807 0.96911 1.00825 1.01135 1.21380 0.93916 0.97197 1.02550 1.20050 0.90741 0.96473 1.00566 1.19687 0.95533 0.95829 0.91944 1.25746 1.02178 1.21824 1.11320 1.84115 1.00485 1.50903 1.29607 1.23962 0.91389 0.94758 0.94501 1.18980 0.89146 1.27478 1.06374 0.87984 1.26179 0.99957 0.94959 0.95597 1.68885 1.18807 1.30026 1.23057 0.85721 0.78182 0.79370 0.80314 1.19038 1.19774 1.18034 1.67231 1.03611 1.31255 1.29928 0.93329 0.93320 0.93073 0.92733 0.91111 0.92133 0.92435 0.85605 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 15 2 C -0.11 -2.05 5.82 -26.73 -0.16 -2.21 15 3 C -0.04 -0.78 5.69 -27.89 -0.16 -0.94 15 4 C 0.11 2.80 6.05 -84.38 -0.51 2.29 15 5 C -0.47 -11.91 10.78 29.53 0.32 -11.59 15 6 S 0.09 2.40 20.22 -107.50 -2.17 0.23 15 7 C 0.21 5.83 7.13 -16.91 -0.12 5.71 15 8 C -0.38 -9.99 9.44 -38.20 -0.36 -10.36 15 9 H 0.10 2.61 7.86 -52.48 -0.41 2.20 15 10 C 0.06 1.33 5.49 -17.28 -0.09 1.23 15 11 N -0.78 -19.10 10.71 55.56 0.60 -18.50 15 12 Si 0.94 17.72 29.57 -169.99 -5.03 12.69 15 13 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 14 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 15 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 16 N -0.60 -16.58 10.44 -9.33 -0.10 -16.67 15 17 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 18 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.05 1.03 8.14 -51.93 -0.42 0.60 15 21 H 0.07 1.41 8.05 -51.93 -0.42 0.99 15 22 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.06 1.06 8.01 -51.93 -0.42 0.64 15 24 H 0.13 2.94 8.06 -52.49 -0.42 2.51 15 25 H 0.30 6.48 8.29 -40.82 -0.34 6.14 15 LS Contribution 233.56 15.07 3.52 3.52 Total: -1.00 -28.49 233.56 -6.81 -35.30 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -2.92 Total: 1.04 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -0.71 Total: -17.61 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.50 Total: -35.18 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.17 Total: 0.23 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.49 -6.81 -35.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050192905.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.429 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds