Wall clock time and date at job start Mon Mar 30 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.50694 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.34852 * 122.10706 * 124.99804 * 4 3 2 6 6 S 1.71044 * 109.23784 * 179.97438 * 5 4 3 7 7 C 1.76086 * 90.38831 * 359.97438 * 6 5 4 8 8 C 1.39911 * 125.54968 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99441 * 173.46214 * 8 7 6 10 10 C 1.40243 * 120.00597 * 353.45901 * 8 7 6 11 11 N 1.30698 * 119.99562 * 6.52860 * 10 8 7 12 12 Si 1.86791 * 120.00298 * 186.52876 * 10 8 7 13 13 H 1.48500 * 109.47569 * 94.98708 * 12 10 8 14 14 H 1.48503 * 109.47216 * 214.98763 * 12 10 8 15 15 H 1.48499 * 109.47353 * 334.98708 * 12 10 8 16 16 N 1.30454 * 122.10117 * 304.97391 * 4 3 2 17 17 H 1.09004 * 109.46855 * 60.00111 * 1 2 3 18 18 H 1.09001 * 109.46886 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47428 * 300.00355 * 1 2 3 20 20 H 1.08991 * 109.47098 * 239.99983 * 2 1 3 21 21 H 1.09004 * 109.46855 * 119.99889 * 2 1 3 22 22 H 1.09002 * 109.47298 * 59.99565 * 3 2 1 23 23 H 1.08995 * 109.47026 * 299.99899 * 3 2 1 24 24 H 1.07998 * 125.38222 * 0.02562 * 5 4 3 25 25 H 0.97001 * 119.99806 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2633 2.0979 -0.9366 6 16 5.9309 1.8800 -0.6248 7 6 5.5510 0.8946 0.7842 8 6 6.4870 0.2982 1.6361 9 1 6.1575 -0.2008 2.5355 10 6 7.8529 0.3484 1.3222 11 7 8.2640 1.0588 0.3051 12 14 9.0847 -0.6002 2.3576 13 1 9.3505 -1.9182 1.7271 14 1 10.3514 0.1694 2.4488 15 1 8.5314 -0.8061 3.7203 16 7 4.2406 0.8090 0.9045 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 1.8933 -0.5138 -0.8899 21 1 1.8933 -0.5138 0.8900 22 1 1.6766 1.9564 0.8900 23 1 1.6767 1.9563 -0.8900 24 1 3.8494 2.6705 -1.7534 25 1 9.2088 1.0938 0.0882 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050192905.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:58 Heat of formation + Delta-G solvation = -20.991083 kcal Electronic energy + Delta-G solvation = -10129.568449 eV Core-core repulsion = 8232.395494 eV Total energy + Delta-G solvation = -1897.172955 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.73794 -36.24247 -35.14685 -31.41832 -28.65458 -27.53916 -23.89415 -22.43142 -19.80194 -19.63141 -17.50652 -16.92108 -15.89098 -15.49256 -14.79728 -14.66551 -14.14420 -13.80731 -13.50106 -13.00088 -12.86493 -12.58185 -12.36449 -12.02655 -11.96651 -11.59805 -11.30520 -11.11601 -9.86040 -9.73994 -9.07055 -8.89148 -6.72071 0.64742 1.39701 1.49828 1.56744 1.58980 2.05064 2.20753 2.30516 3.15299 4.04974 4.16998 4.26803 4.51350 4.79701 4.82216 4.89814 4.95910 5.06440 5.18289 5.28015 5.49747 5.53212 5.75653 5.94587 6.39589 6.50168 7.83253 8.02031 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.056158 B = 0.010059 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.471520 B = 2783.021268 C = 3202.120450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.037 4.037 4 C 0.100 3.900 5 C -0.486 4.486 6 S 0.070 5.930 7 C 0.172 3.828 8 C -0.401 4.401 9 H 0.103 0.897 10 C 0.020 3.980 11 N -0.797 5.797 12 Si 1.020 2.980 13 H -0.258 1.258 14 H -0.257 1.257 15 H -0.253 1.253 16 N -0.626 5.626 17 H 0.064 0.936 18 H 0.063 0.937 19 H 0.059 0.941 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.144 0.856 25 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -1.697 0.284 2.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C -0.077 4.077 4 C -0.040 4.040 5 C -0.629 4.629 6 S 0.327 5.673 7 C -0.079 4.079 8 C -0.443 4.443 9 H 0.120 0.880 10 C -0.201 4.201 11 N -0.425 5.425 12 Si 0.838 3.162 13 H -0.182 1.182 14 H -0.180 1.180 15 H -0.177 1.177 16 N -0.349 5.349 17 H 0.083 0.917 18 H 0.082 0.918 19 H 0.079 0.921 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.162 0.838 25 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.553 -1.520 0.031 2.173 hybrid contribution -0.422 -0.035 0.009 0.424 sum -1.975 -1.555 0.040 2.514 Atomic orbital electron populations 1.21725 0.93267 1.02325 1.02379 1.21303 0.96999 0.95385 1.00820 1.20182 0.87471 0.98141 1.01887 1.20411 0.98004 0.94560 0.91017 1.25953 1.01592 1.22953 1.12422 1.83911 1.01957 1.51567 1.29821 1.24479 0.92177 0.95701 0.95547 1.19385 0.90596 1.27845 1.06491 0.87950 1.27261 1.00879 0.95295 0.96644 1.68909 1.20300 1.29728 1.23557 0.84589 0.75473 0.77901 0.78257 1.18192 1.18038 1.17674 1.67305 1.03758 1.32652 1.31235 0.91743 0.91758 0.92148 0.93860 0.93503 0.91403 0.90321 0.83850 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 15 2 C -0.11 -3.82 5.82 30.60 0.18 -3.64 15 3 C -0.04 -1.47 5.69 29.85 0.17 -1.30 15 4 C 0.10 5.10 6.05 41.98 0.25 5.36 15 5 C -0.49 -25.01 10.78 67.04 0.72 -24.28 15 6 S 0.07 3.77 20.22 -56.49 -1.14 2.63 15 7 C 0.17 9.93 7.13 85.09 0.61 10.54 15 8 C -0.40 -21.46 9.44 23.16 0.22 -21.25 15 9 H 0.10 5.30 7.86 -2.91 -0.02 5.28 15 10 C 0.02 0.93 5.49 85.35 0.47 1.40 15 11 N -0.80 -38.65 10.71 21.88 0.23 -38.42 15 12 Si 1.02 34.82 29.57 68.60 2.03 36.85 15 13 H -0.26 -8.47 7.11 99.48 0.71 -7.77 15 14 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 15 H -0.25 -8.47 7.11 99.48 0.71 -7.76 15 16 N -0.63 -35.46 10.44 -183.44 -1.91 -37.38 15 17 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 18 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.05 1.87 8.05 -2.39 -0.02 1.85 15 22 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.08 2.75 8.01 -2.39 -0.02 2.73 15 24 H 0.14 6.65 8.06 -2.91 -0.02 6.63 15 25 H 0.31 13.18 8.29 -92.71 -0.77 12.41 15 Total: -1.00 -61.61 233.56 3.71 -57.90 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.17 Total: 14.49 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 3.33 Total: -36.07 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.68 Total: -75.79 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.14 Total: 2.63 kcal Total: -61.61 3.71 -57.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050192905.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.908 kcal (2) G-P(sol) polarization free energy of solvation -61.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds