Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47216 * 89.99951 * 6 5 4 8 8 C 1.36937 * 119.99720 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00019 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99933 * 179.97438 * 8 7 6 11 11 N 1.31615 * 119.99609 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99868 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47326 * 90.00417 * 12 10 8 14 14 H 1.48504 * 109.46730 * 209.99852 * 12 10 8 15 15 H 1.48495 * 109.47543 * 329.99762 * 12 10 8 16 16 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 17 17 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 18 18 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 19 19 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 20 20 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 21 21 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 22 22 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 23 23 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 24 24 H 0.96999 * 120.00291 * 359.97438 * 7 6 5 25 25 H 0.97003 * 119.99818 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 7 5.8433 -1.1486 1.3817 8 6 7.1041 -1.6210 1.6318 9 1 7.7611 -1.8674 0.8108 10 6 7.5375 -1.7831 2.9405 11 7 6.7369 -1.4823 3.9409 12 14 9.2571 -2.4282 3.2817 13 1 10.2046 -1.2883 3.3717 14 1 9.2595 -3.1763 4.5645 15 1 9.6740 -3.3328 2.1804 16 16 2.5210 -1.4371 0.0077 17 1 -0.3633 0.0000 -1.0277 18 1 -0.3633 0.8900 0.5138 19 1 -0.3633 -0.8900 0.5139 20 1 1.8669 2.0895 -0.0007 21 1 4.3721 1.6351 0.0002 22 1 5.4136 -1.9379 -0.5135 23 1 6.0389 -0.2713 -0.5134 24 1 5.2533 -0.9269 2.1190 25 1 7.0399 -1.5952 4.8554 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050225553.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = 15.865288 kcal Electronic energy + Delta-G solvation = -9924.517639 eV Core-core repulsion = 8028.942896 eV Total energy + Delta-G solvation = -1895.574743 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.01875 -36.59631 -33.89058 -32.14570 -28.98759 -25.99563 -24.37433 -23.32525 -19.89313 -19.17900 -17.70526 -16.72646 -16.15659 -15.34474 -15.07455 -14.66150 -14.61993 -13.92893 -13.43479 -13.11263 -12.91127 -12.73444 -12.67755 -12.31033 -12.10986 -11.86511 -11.59086 -11.00646 -9.38607 -9.36535 -9.07810 -7.97883 -5.29535 0.07864 0.72131 1.13914 1.46642 1.49227 1.57816 1.85224 2.55329 3.35487 3.95369 4.05192 4.15271 4.46521 4.49550 4.75412 4.79435 4.81199 4.89246 5.14316 5.30410 5.44315 5.44995 5.68668 6.21831 7.28743 7.98886 8.26191 9.25630 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.078064 B = 0.007628 C = 0.007563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.592053 B = 3669.655217 C = 3701.227808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.180 4.180 3 C -0.150 4.150 4 C -0.130 4.130 5 C -0.197 4.197 6 C 0.220 3.780 7 N -0.739 5.739 8 C -0.253 4.253 9 H 0.080 0.920 10 C -0.073 4.073 11 N -0.970 5.970 12 Si 0.980 3.020 13 H -0.284 1.284 14 H -0.294 1.294 15 H -0.268 1.268 16 S 0.081 5.919 17 H 0.090 0.910 18 H 0.092 0.908 19 H 0.071 0.929 20 H 0.164 0.836 21 H 0.140 0.860 22 H 0.028 0.972 23 H 0.044 0.956 24 H 0.374 0.626 25 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 3.625 -9.072 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.298 4.298 3 C -0.179 4.179 4 C -0.162 4.162 5 C -0.315 4.315 6 C 0.092 3.908 7 N -0.383 5.383 8 C -0.385 4.385 9 H 0.098 0.902 10 C -0.265 4.265 11 N -0.620 5.620 12 Si 0.808 3.192 13 H -0.211 1.211 14 H -0.220 1.220 15 H -0.192 1.192 16 S 0.344 5.656 17 H 0.108 0.892 18 H 0.111 0.889 19 H 0.090 0.910 20 H 0.182 0.818 21 H 0.158 0.842 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.205 0.795 25 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.384 1.989 -9.134 14.730 hybrid contribution 1.219 1.188 0.726 1.850 sum -10.165 3.177 -8.408 13.569 Atomic orbital electron populations 1.20444 0.85285 1.04064 1.03894 1.24978 1.01384 0.94748 1.08674 1.20274 0.91943 1.00490 1.05205 1.20349 0.97384 0.95608 1.02822 1.24608 0.98670 0.97230 1.10947 1.19173 0.87397 0.97175 0.87053 1.42585 1.14656 1.79024 1.01989 1.19690 0.91452 1.34960 0.92352 0.90208 1.25649 1.02502 1.03054 0.95309 1.69848 1.37704 1.56063 0.98384 0.85053 0.79163 0.77855 0.77126 1.21115 1.22033 1.19242 1.84193 0.96825 1.10930 1.73616 0.89152 0.88893 0.91033 0.81823 0.84180 0.95377 0.93858 0.79470 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.38 71.24 0.74 -0.66 15 2 C -0.18 -4.82 6.51 24.59 0.16 -4.66 15 3 C -0.15 -4.12 10.05 21.22 0.21 -3.90 15 4 C -0.13 -4.36 10.05 21.22 0.21 -4.14 15 5 C -0.20 -7.46 5.88 24.59 0.14 -7.32 15 6 C 0.22 9.60 6.75 85.63 0.58 10.18 15 7 N -0.74 -39.95 5.59 -347.16 -1.94 -41.89 15 8 C -0.25 -14.61 9.99 84.03 0.84 -13.77 15 9 H 0.08 4.37 7.83 -2.91 -0.02 4.34 15 10 C -0.07 -4.28 5.50 84.86 0.47 -3.81 15 11 N -0.97 -60.96 13.06 21.65 0.28 -60.68 15 12 Si 0.98 46.77 29.55 68.60 2.03 48.80 15 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 14 H -0.29 -14.05 7.11 99.48 0.71 -13.35 15 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 16 S 0.08 2.65 23.31 -56.49 -1.32 1.33 15 17 H 0.09 1.30 8.14 -2.39 -0.02 1.28 15 18 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 19 H 0.07 1.23 8.14 -2.38 -0.02 1.21 15 20 H 0.16 3.42 8.06 -2.91 -0.02 3.40 15 21 H 0.14 4.46 8.06 -2.91 -0.02 4.44 15 22 H 0.03 1.23 8.14 -2.38 -0.02 1.21 15 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.37 21.74 7.66 -92.71 -0.71 21.03 15 25 H 0.25 15.29 8.31 -92.71 -0.77 14.52 15 Total: -1.00 -66.06 238.57 2.88 -63.18 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.47 Total: 17.34 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 3.35 Total: -28.08 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -1.66 Total: -102.57 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.32 Total: 1.33 kcal Total: -66.06 2.88 -63.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050225553.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.042 kcal (2) G-P(sol) polarization free energy of solvation -66.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds