Wall clock time and date at job start Mon Mar 30 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21429 * 120.00089 * 2 1 4 4 C 1.41573 * 119.99885 * 180.02562 * 2 1 3 5 5 C 1.38379 * 126.01839 * 180.02562 * 4 2 1 6 6 N 1.29406 * 115.18679 * 179.97438 * 5 4 2 7 7 C 1.32015 * 117.37495 * 359.97438 * 6 5 4 8 8 C 1.39784 * 125.25323 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99932 * 179.97438 * 8 7 6 10 10 C 1.40595 * 119.99669 * 359.97438 * 8 7 6 11 11 N 1.30460 * 120.00693 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99713 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47410 * 0.02562 * 12 10 8 14 14 H 1.48509 * 109.47229 * 119.99751 * 12 10 8 15 15 H 1.48497 * 109.47531 * 239.99871 * 12 10 8 16 16 S 1.76117 * 109.49218 * 359.75550 * 7 6 5 17 17 H 1.09002 * 109.47152 * 270.00095 * 1 2 3 18 18 H 1.09001 * 109.46980 * 150.00195 * 1 2 3 19 19 H 1.09004 * 109.47113 * 30.00176 * 1 2 3 20 20 H 1.07996 * 122.40835 * 359.95290 * 5 4 2 21 21 H 0.96996 * 120.00276 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0516 0.0000 4 6 2.2149 -1.2261 -0.0005 5 6 3.5910 -1.3712 -0.0001 6 7 4.0159 -2.5935 -0.0002 7 6 3.1079 -3.5518 -0.0002 8 6 3.3815 -4.9226 0.0001 9 1 2.5700 -5.6352 0.0005 10 6 4.7132 -5.3735 0.0000 11 7 5.6935 -4.5127 -0.0010 12 14 5.0789 -7.2054 0.0012 13 1 3.8028 -7.9649 0.0016 14 1 5.8619 -7.5547 -1.2114 15 1 5.8627 -7.5530 1.2137 16 16 1.4986 -2.8364 0.0070 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 -0.8900 -0.5138 19 1 -0.3633 0.8900 -0.5139 20 1 4.2623 -0.5252 0.0000 21 1 6.6122 -4.8239 -0.0007 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054159112.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:43 Heat of formation + Delta-G solvation = -40.155430 kcal Electronic energy + Delta-G solvation = -9891.954798 eV Core-core repulsion = 7858.117720 eV Total energy + Delta-G solvation = -2033.837078 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.16301 -38.94913 -35.93938 -32.11805 -30.83785 -28.37786 -25.09291 -22.24979 -20.88092 -18.46735 -18.33878 -16.92928 -16.43027 -15.79383 -15.45268 -14.74158 -14.55218 -14.42596 -13.34379 -13.21115 -13.05220 -12.99703 -12.86086 -11.98657 -11.77758 -11.45776 -10.59388 -9.83078 -9.81255 -9.66264 -8.87484 -6.95975 -0.12017 1.17494 1.37988 1.41664 1.56583 1.63123 1.81300 2.09525 2.48567 3.08300 3.81691 4.01441 4.43091 4.65344 4.66250 4.80262 4.96881 5.29840 5.45186 5.74527 5.90977 6.22772 7.04614 7.65473 7.89959 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.085737 B = 0.009995 C = 0.008995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.503106 B = 2800.623226 C = 3111.979742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.419 3.581 3 O -0.569 6.569 4 C -0.495 4.495 5 C 0.191 3.809 6 N -0.566 5.566 7 C 0.179 3.821 8 C -0.323 4.323 9 H 0.132 0.868 10 C 0.013 3.987 11 N -0.707 5.707 12 Si 1.016 2.984 13 H -0.237 1.237 14 H -0.259 1.259 15 H -0.259 1.259 16 S -0.080 6.080 17 H 0.100 0.900 18 H 0.079 0.921 19 H 0.090 0.910 20 H 0.147 0.853 21 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -6.588 0.087 7.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.310 3.690 3 O -0.458 6.458 4 C -0.618 4.618 5 C 0.017 3.983 6 N -0.285 5.285 7 C -0.060 4.060 8 C -0.363 4.363 9 H 0.150 0.850 10 C -0.219 4.219 11 N -0.325 5.325 12 Si 0.832 3.168 13 H -0.160 1.160 14 H -0.183 1.183 15 H -0.183 1.183 16 S 0.173 5.827 17 H 0.119 0.881 18 H 0.098 0.902 19 H 0.108 0.892 20 H 0.165 0.835 21 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.235 -6.640 0.093 7.387 hybrid contribution 0.886 0.549 -0.005 1.042 sum -2.349 -6.091 0.087 6.529 Atomic orbital electron populations 1.22061 0.92583 1.04165 1.04737 1.20062 0.92250 0.85722 0.70934 1.90419 1.73204 1.34842 1.47351 1.24037 0.96996 0.96988 1.43774 1.22563 0.92390 0.94694 0.88622 1.66994 1.34063 0.98592 1.28889 1.24668 0.87780 0.97775 0.95770 1.20415 0.95886 0.89526 1.30516 0.85044 1.27666 0.94339 1.07263 0.92590 1.69934 1.02433 1.40282 1.19894 0.84635 0.80717 0.71832 0.79619 1.15961 1.18290 1.18281 1.83561 1.14965 1.00617 1.83562 0.88149 0.90189 0.89166 0.83545 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.18 9.97 71.24 0.71 -5.47 14 2 C 0.42 19.45 7.06 26.51 0.19 19.63 14 3 O -0.57 -29.34 17.52 -3.49 -0.06 -29.40 14 4 C -0.49 -24.73 6.32 23.13 0.15 -24.58 14 5 C 0.19 10.17 11.03 85.08 0.94 11.11 14 6 N -0.57 -31.14 8.58 -193.52 -1.66 -32.80 14 7 C 0.18 9.17 7.07 85.04 0.60 9.77 14 8 C -0.32 -14.64 9.40 23.22 0.22 -14.42 14 9 H 0.13 5.14 7.86 -2.91 -0.02 5.12 14 10 C 0.01 0.53 5.51 85.47 0.47 1.00 14 11 N -0.71 -32.71 11.85 21.94 0.26 -32.45 14 12 Si 1.02 29.20 29.56 68.60 2.03 31.23 14 13 H -0.24 -6.26 7.11 99.48 0.71 -5.55 14 14 H -0.26 -7.21 7.11 99.48 0.71 -6.50 14 15 H -0.26 -7.20 7.11 99.48 0.71 -6.50 14 16 S -0.08 -3.71 22.23 -56.49 -1.26 -4.96 14 17 H 0.10 3.08 8.14 -2.39 -0.02 3.07 14 18 H 0.08 2.66 7.32 -2.39 -0.02 2.64 14 19 H 0.09 2.77 8.14 -2.38 -0.02 2.75 14 20 H 0.15 7.50 8.03 -2.91 -0.02 7.48 14 21 H 0.31 12.23 8.29 -92.71 -0.77 11.46 14 Total: -1.00 -61.22 215.18 3.83 -57.39 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.25 Total: 13.96 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 3.27 Total: -2.96 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -1.40 Total: -65.25 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.06 Total: -29.40 kcal Atomic # 14 Polarization: 29.20 SS G_CDS: 2.03 Total: 31.23 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.26 Total: -4.96 kcal Total: -61.22 3.83 -57.39 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054159112.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.234 kcal (2) G-P(sol) polarization free energy of solvation -61.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds