Wall clock time and date at job start Mon Mar 30 2020 01:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48501 * 109.47025 * 85.61413 * 3 2 1 5 5 H 1.48495 * 109.47294 * 205.61615 * 3 2 1 6 6 H 1.48501 * 109.46721 * 325.61597 * 3 2 1 7 7 C 1.39867 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99559 * 163.07181 * 7 2 1 9 9 C 1.41090 * 120.00081 * 343.07194 * 7 2 1 10 10 C 1.40897 * 120.16927 * 334.10918 * 9 7 2 11 11 C 1.36307 * 119.84479 * 179.73522 * 10 9 7 12 12 C 1.39630 * 120.19321 * 0.51816 * 11 10 9 13 13 N 1.38867 * 119.82808 * 179.73805 * 12 11 10 14 14 C 1.39460 * 120.33640 * 359.75376 * 12 11 10 15 15 C 1.36503 * 120.15054 * 359.97438 * 14 12 11 16 16 Cl 1.73603 * 120.09872 * 179.97438 * 15 14 12 17 17 H 0.96996 * 119.99468 * 0.02562 * 1 2 3 18 18 H 1.07994 * 120.07566 * 359.97108 * 10 9 7 19 19 H 1.08005 * 119.90453 * 180.22762 * 11 10 9 20 20 H 0.97006 * 120.00013 * 180.02562 * 13 12 11 21 21 H 0.96999 * 120.00684 * 0.02562 * 13 12 11 22 22 H 1.07994 * 119.92253 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.3981 2.0999 1.3960 5 1 3.5841 1.4151 -0.6053 6 1 1.4901 2.6240 -0.7907 7 6 2.0085 -1.2113 0.0005 8 1 3.0533 -1.2317 -0.2718 9 6 1.3488 -2.4065 0.3568 10 6 0.2234 -2.3688 1.2038 11 6 -0.4121 -3.5270 1.5394 12 6 0.0555 -4.7503 1.0552 13 7 -0.5945 -5.9262 1.4063 14 6 1.1721 -4.7973 0.2210 15 6 1.8158 -3.6454 -0.1284 16 17 3.2061 -3.7055 -1.1664 17 1 -0.4849 0.8401 -0.0004 18 1 -0.1371 -1.4241 1.5830 19 1 -1.2770 -3.4989 2.1856 20 1 -0.2716 -6.7775 1.0716 21 1 -1.3714 -5.8964 1.9863 22 1 1.5283 -5.7472 -0.1494 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059673177.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:16 Heat of formation + Delta-G solvation = -13.692227 kcal Electronic energy + Delta-G solvation = -10084.960949 eV Core-core repulsion = 8050.227695 eV Total energy + Delta-G solvation = -2034.733254 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.69954 -36.90179 -36.08164 -33.99576 -31.16546 -30.24279 -26.21922 -23.10740 -22.35167 -19.20261 -17.71455 -17.41848 -16.69488 -15.74043 -14.88133 -14.67831 -14.27308 -14.13190 -13.50653 -12.86176 -12.77355 -12.50128 -12.37912 -11.91351 -11.47931 -11.17030 -11.13018 -10.49283 -9.31002 -8.59478 -8.29290 -6.03747 0.91622 1.09666 1.42058 1.54319 1.56586 1.87474 2.27843 2.80565 3.52336 3.71381 4.40007 4.58625 5.08284 5.16391 5.38494 5.52415 5.59991 5.81735 6.09176 6.24939 6.60652 6.89008 7.00735 7.13785 7.40249 8.44729 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.038848 B = 0.013989 C = 0.010569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.582889 B = 2001.071331 C = 2648.525184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.036 3.964 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.486 4.486 8 H 0.074 0.926 9 C 0.046 3.954 10 C -0.128 4.128 11 C -0.172 4.172 12 C 0.121 3.879 13 N -0.875 5.875 14 C -0.168 4.168 15 C -0.110 4.110 16 Cl -0.108 7.108 17 H 0.285 0.715 18 H 0.110 0.890 19 H 0.118 0.882 20 H 0.398 0.602 21 H 0.399 0.601 22 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -4.471 1.923 4.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.177 4.177 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.195 1.195 7 C -0.517 4.517 8 H 0.092 0.908 9 C 0.042 3.958 10 C -0.149 4.149 11 C -0.194 4.194 12 C 0.019 3.981 13 N -0.419 5.419 14 C -0.192 4.192 15 C -0.139 4.139 16 Cl -0.080 7.080 17 H 0.095 0.905 18 H 0.128 0.872 19 H 0.136 0.864 20 H 0.226 0.774 21 H 0.228 0.772 22 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.227 -4.258 1.797 4.627 hybrid contribution 0.229 0.483 -0.143 0.553 sum 0.002 -3.775 1.654 4.122 Atomic orbital electron populations 1.69893 1.08596 1.30050 1.37741 1.26566 0.95431 1.03937 0.91767 0.85318 0.79128 0.76790 0.79256 1.18728 1.18760 1.19504 1.19585 0.97954 0.91950 1.42217 0.90760 1.17639 0.93784 0.91744 0.92640 1.20847 0.97819 0.97261 0.98939 1.20380 1.02252 0.91616 1.05184 1.17262 0.94261 0.87484 0.99116 1.41699 1.35945 1.04705 1.59570 1.19845 0.98406 0.96522 1.04415 1.20515 0.94854 0.95290 1.03199 1.98189 1.43562 1.98721 1.67487 0.90487 0.87175 0.86417 0.77400 0.77249 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.99 10.99 21.82 0.24 -43.75 14 2 C 0.04 1.84 5.14 85.22 0.44 2.28 14 3 Si 0.97 39.52 29.59 68.60 2.03 41.55 14 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 14 5 H -0.26 -10.65 7.11 99.48 0.71 -9.94 14 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 14 7 C -0.49 -26.57 8.50 23.36 0.20 -26.38 14 8 H 0.07 4.04 7.11 -2.91 -0.02 4.02 14 9 C 0.05 2.47 5.56 -21.25 -0.12 2.35 14 10 C -0.13 -6.60 8.62 22.47 0.19 -6.41 14 11 C -0.17 -7.58 9.82 22.16 0.22 -7.36 14 12 C 0.12 4.88 6.77 38.66 0.26 5.14 14 13 N -0.88 -25.69 9.05 -51.09 -0.46 -26.15 14 14 C -0.17 -7.29 9.59 22.16 0.21 -7.08 14 15 C -0.11 -5.43 6.33 22.54 0.14 -5.28 14 16 Cl -0.11 -4.81 27.58 -2.72 -0.08 -4.89 14 17 H 0.28 13.62 8.30 -92.71 -0.77 12.85 14 18 H 0.11 5.91 6.22 -2.91 -0.02 5.89 14 19 H 0.12 4.48 8.06 -2.91 -0.02 4.46 14 20 H 0.40 9.77 8.83 -92.70 -0.82 8.95 14 21 H 0.40 9.81 8.83 -92.71 -0.82 8.99 14 22 H 0.12 4.56 8.06 -2.91 -0.02 4.54 14 Total: -1.00 -58.41 214.26 2.91 -55.50 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.37 Total: 20.45 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 1.55 Total: -42.73 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -0.22 Total: -69.89 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Atomic # 17 Polarization: -4.81 SS G_CDS: -0.08 Total: -4.89 kcal Total: -58.41 2.91 -55.50 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059673177.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.812 kcal (2) G-P(sol) polarization free energy of solvation -58.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds