Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29574 * 124.65227 * 2 1 4 4 C 1.30710 * 117.53305 * 180.02562 * 3 2 1 5 5 C 1.37562 * 113.78908 * 359.97438 * 4 3 2 6 6 C 1.46636 * 126.20526 * 179.97438 * 5 4 3 7 7 O 1.22003 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.41618 * 119.99567 * 180.02562 * 6 5 4 9 9 H 1.08002 * 120.00508 * 0.02562 * 8 6 5 10 10 C 1.40350 * 119.99830 * 179.72278 * 8 6 5 11 11 N 1.30524 * 119.99891 * 0.27943 * 10 8 6 12 12 Si 1.86798 * 120.00350 * 180.27759 * 10 8 6 13 13 H 1.48506 * 109.46985 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 119.99988 * 12 10 8 15 15 H 1.48506 * 109.47035 * 240.00403 * 12 10 8 16 16 S 1.70904 * 124.65704 * 180.29331 * 2 1 3 17 17 H 1.08994 * 109.47432 * 89.97919 * 1 2 3 18 18 H 1.09004 * 109.47039 * 209.97702 * 1 2 3 19 19 H 1.08999 * 109.47568 * 329.97307 * 1 2 3 20 20 H 1.08001 * 123.11103 * 180.02562 * 4 3 2 21 21 H 0.97005 * 119.99940 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0659 0.0000 4 6 3.5407 0.9039 -0.0005 5 6 3.9353 -0.4139 -0.0004 6 6 5.3173 -0.9042 -0.0015 7 8 6.2455 -0.1124 -0.0020 8 6 5.5744 -2.2969 -0.0018 9 1 4.7527 -2.9978 -0.0017 10 6 6.8971 -2.7663 -0.0086 11 7 7.8901 -1.9192 -0.0092 12 14 7.2363 -4.6032 -0.0169 13 1 5.9494 -5.3442 -0.0141 14 1 8.0099 -4.9582 -1.2337 15 1 8.0192 -4.9674 1.1913 16 16 2.4788 -1.4058 -0.0072 17 1 -0.3634 0.0004 -1.0276 18 1 -0.3633 -0.8902 0.5135 19 1 -0.3634 0.8897 0.5142 20 1 4.2383 1.7284 -0.0002 21 1 8.8043 -2.2436 -0.0136 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074337938.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = -33.400047 kcal Electronic energy + Delta-G solvation = -9893.302528 eV Core-core repulsion = 7859.758385 eV Total energy + Delta-G solvation = -2033.544143 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.50162 -38.61748 -34.89611 -32.90163 -30.22333 -28.34618 -25.14184 -23.06433 -20.08636 -19.30914 -18.07090 -17.23434 -16.15957 -15.86569 -15.23292 -14.80079 -14.30345 -14.22254 -13.46450 -13.22935 -13.13989 -12.77796 -12.75580 -12.30540 -11.99312 -11.08754 -10.63457 -10.23865 -9.84707 -9.59733 -8.47816 -7.22091 -0.47076 0.49745 0.91935 1.32730 1.36899 1.56383 1.70415 2.17161 2.33991 3.30289 3.47363 4.16692 4.35258 4.52370 4.70855 4.74356 5.06272 5.08695 5.32907 5.79756 6.54172 6.57043 6.80954 8.06573 8.36369 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.061937 B = 0.010853 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.961145 B = 2579.238169 C = 3016.051836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.013 3.987 3 N -0.499 5.499 4 C 0.044 3.956 5 C -0.281 4.281 6 C 0.391 3.609 7 O -0.589 6.589 8 C -0.531 4.531 9 H 0.093 0.907 10 C 0.022 3.978 11 N -0.780 5.780 12 Si 0.998 3.002 13 H -0.241 1.241 14 H -0.261 1.261 15 H -0.261 1.261 16 S 0.200 5.800 17 H 0.103 0.897 18 H 0.105 0.895 19 H 0.093 0.907 20 H 0.163 0.837 21 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.867 -4.981 -0.040 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.261 4.261 3 N -0.215 5.215 4 C -0.111 4.111 5 C -0.404 4.404 6 C 0.290 3.710 7 O -0.484 6.484 8 C -0.562 4.562 9 H 0.112 0.888 10 C -0.198 4.198 11 N -0.408 5.408 12 Si 0.816 3.184 13 H -0.164 1.164 14 H -0.186 1.186 15 H -0.186 1.186 16 S 0.456 5.544 17 H 0.121 0.879 18 H 0.124 0.876 19 H 0.112 0.888 20 H 0.181 0.819 21 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.829 -5.084 -0.048 12.875 hybrid contribution 1.324 0.577 -0.006 1.444 sum -10.505 -4.508 -0.054 11.431 Atomic orbital electron populations 1.20630 0.81638 1.05510 1.05263 1.28224 1.03724 0.91307 1.02834 1.66029 1.04644 1.32806 1.17976 1.22394 0.91034 0.95578 1.02079 1.27860 1.02612 0.97524 1.12407 1.17776 0.83600 0.90610 0.79025 1.90534 1.45562 1.59680 1.52631 1.21393 0.94547 0.93199 1.47103 0.88849 1.27318 0.95010 1.06286 0.91142 1.70083 1.01009 1.39418 1.30286 0.84956 0.80205 0.73992 0.79282 1.16386 1.18560 1.18558 1.83194 0.94814 1.10709 1.65675 0.87896 0.87639 0.88800 0.81949 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.46 71.23 0.74 -0.65 14 2 C 0.01 0.44 7.37 88.44 0.65 1.09 14 3 N -0.50 -20.11 10.49 -188.95 -1.98 -22.09 14 4 C 0.04 2.06 11.21 84.70 0.95 3.01 14 5 C -0.28 -13.95 6.49 24.30 0.16 -13.79 14 6 C 0.39 23.32 6.90 25.30 0.17 23.49 14 7 O -0.59 -39.98 15.43 -5.33 -0.08 -40.06 14 8 C -0.53 -29.52 9.04 23.62 0.21 -29.30 14 9 H 0.09 4.62 7.15 -2.91 -0.02 4.60 14 10 C 0.02 1.19 5.50 85.40 0.47 1.66 14 11 N -0.78 -45.56 11.73 21.89 0.26 -45.30 14 12 Si 1.00 38.07 29.56 68.60 2.03 40.10 14 13 H -0.24 -8.46 7.11 99.48 0.71 -7.75 14 14 H -0.26 -9.49 7.11 99.48 0.71 -8.78 14 15 H -0.26 -9.49 7.11 99.48 0.71 -8.78 14 16 S 0.20 7.28 22.18 -56.49 -1.25 6.03 14 17 H 0.10 1.66 8.14 -2.39 -0.02 1.64 14 18 H 0.11 1.53 8.14 -2.38 -0.02 1.51 14 19 H 0.09 1.73 8.14 -2.39 -0.02 1.71 14 20 H 0.16 7.73 8.06 -2.91 -0.02 7.70 14 21 H 0.29 14.78 8.29 -92.70 -0.77 14.01 14 Total: -1.00 -73.53 215.60 3.58 -69.95 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.25 Total: 5.87 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.36 Total: -14.49 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -1.73 Total: -67.40 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -0.08 Total: -40.06 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 16 Polarization: 7.28 SS G_CDS: -1.25 Total: 6.03 kcal Total: -73.53 3.58 -69.95 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074337938.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.554 kcal (2) G-P(sol) polarization free energy of solvation -73.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds