Wall clock time and date at job start Mon Mar 30 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20821 * 119.99977 * 2 1 4 4 O 1.34298 * 119.99600 * 180.02562 * 2 1 3 5 5 C 1.35786 * 116.99631 * 179.97438 * 4 2 1 6 6 N 1.33731 * 125.52171 * 359.97438 * 5 4 2 7 7 C 1.30806 * 109.84278 * 179.97438 * 6 5 4 8 8 N 1.35343 * 108.06575 * 0.26096 * 7 6 5 9 9 C 1.37298 * 126.82913 * 179.73692 * 8 7 6 10 10 H 1.07997 * 119.99690 * 359.97438 * 9 8 7 11 11 C 1.38982 * 119.99716 * 179.97438 * 9 8 7 12 12 N 1.31289 * 120.00081 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99786 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47133 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47332 * 120.00176 * 13 11 9 16 16 H 1.48500 * 109.47116 * 240.00080 * 13 11 9 17 17 N 1.31250 * 125.52054 * 179.97438 * 5 4 2 18 18 H 1.09002 * 109.46720 * 240.00082 * 1 2 3 19 19 H 1.08995 * 109.47103 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46893 * 120.00220 * 1 2 3 21 21 H 1.08002 * 125.96545 * 179.97438 * 7 6 5 22 22 H 0.97007 * 119.99806 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1784 -1.1631 -0.0005 5 6 3.5344 -1.0920 -0.0010 6 7 4.2534 0.0356 -0.0015 7 6 5.5296 -0.2516 -0.0014 8 7 5.6566 -1.5990 -0.0066 9 6 6.8280 -2.3152 -0.0133 10 1 7.7765 -1.7989 -0.0153 11 6 6.7929 -3.7046 -0.0176 12 7 5.6398 -4.3321 -0.0157 13 14 8.3866 -4.6790 -0.0260 14 1 9.5393 -3.7427 -0.0263 15 1 8.4478 -5.5383 1.1835 16 1 8.4397 -5.5306 -1.2414 17 7 4.3519 -2.1189 -0.0011 18 1 -0.3633 -0.5138 0.8900 19 1 -0.3633 1.0276 0.0005 20 1 -0.3633 -0.5139 -0.8900 21 1 6.3403 0.4620 -0.0021 22 1 5.6153 -5.3019 -0.0183 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075546994.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:14 Heat of formation + Delta-G solvation = 31.968536 kcal Electronic energy + Delta-G solvation = -12087.781700 eV Core-core repulsion = 9646.612032 eV Total energy + Delta-G solvation = -2441.169668 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.70828 -39.48374 -36.13501 -33.87182 -30.96433 -30.04771 -29.31269 -25.37370 -22.55270 -21.21686 -19.22660 -17.86441 -17.04170 -16.02039 -15.97396 -15.09388 -14.25655 -13.97434 -13.40855 -12.83599 -12.55077 -12.15973 -11.99945 -11.49604 -11.37573 -11.17445 -10.67997 -10.22688 -9.82080 -9.70761 -8.40136 -8.20031 -7.93687 -6.72909 -4.50958 2.64039 2.89732 2.96672 3.03678 3.06328 3.43557 3.75010 4.39261 4.58899 4.88788 5.15484 5.39310 5.45868 5.71059 6.00320 6.50463 6.89533 7.01248 7.60735 7.75174 8.03143 8.52701 8.71734 9.13303 9.76977 10.24105 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.089555 B = 0.009223 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.582213 B = 3035.083155 C = 3332.514345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.439 3.561 3 O -0.457 6.457 4 O -0.252 6.252 5 C 0.277 3.723 6 N -0.551 5.551 7 C 0.103 3.897 8 N -0.147 5.147 9 C -0.322 4.322 10 H 0.128 0.872 11 C 0.047 3.953 12 N -0.764 5.764 13 Si 0.940 3.060 14 H -0.260 1.260 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.264 5.264 18 H 0.096 0.904 19 H 0.099 0.901 20 H 0.096 0.904 21 H 0.194 0.806 22 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 1.529 -0.001 3.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.277 3.723 3 O -0.338 6.338 4 O -0.158 6.158 5 C -0.034 4.034 6 N -0.291 5.291 7 C -0.182 4.182 8 N 0.075 4.925 9 C -0.456 4.456 10 H 0.146 0.854 11 C -0.172 4.172 12 N -0.390 5.390 13 Si 0.763 3.237 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.198 1.198 17 N -0.114 5.114 18 H 0.115 0.885 19 H 0.118 0.882 20 H 0.115 0.885 21 H 0.211 0.789 22 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.629 1.338 -0.002 3.868 hybrid contribution 0.950 -0.404 -0.003 1.032 sum -2.679 0.933 -0.005 2.837 Atomic orbital electron populations 1.21552 0.86840 1.05430 1.05448 1.23925 0.91471 0.81800 0.75089 1.90782 1.69693 1.31985 1.41381 1.84401 1.14197 1.35598 1.81623 1.21469 0.83040 0.89600 1.09330 1.70306 1.02030 1.28052 1.28715 1.25063 0.94451 0.85373 1.13267 1.46403 1.04372 1.04199 1.37567 1.20137 0.82682 0.89684 1.53142 0.85427 1.25745 0.99275 0.97211 0.94973 1.70200 1.24876 1.09931 1.34015 0.85675 0.79891 0.79521 0.78602 1.18414 1.19755 1.19751 1.79211 0.86438 1.13730 1.31996 0.88534 0.88192 0.88527 0.78931 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 10.43 36.01 0.38 -1.26 14 2 C 0.44 8.84 8.01 36.01 0.29 9.13 14 3 O -0.46 -10.86 15.21 -18.74 -0.29 -11.15 14 4 O -0.25 -6.09 10.17 -23.28 -0.24 -6.33 14 5 C 0.28 7.78 8.82 -90.93 -0.80 6.98 14 6 N -0.55 -15.19 8.87 -15.69 -0.14 -15.33 14 7 C 0.10 2.63 12.60 -89.85 -1.13 1.50 14 8 N -0.15 -4.10 3.73 -12.77 -0.05 -4.15 14 9 C -0.32 -8.29 10.28 -14.83 -0.15 -8.44 14 10 H 0.13 2.86 7.83 -52.49 -0.41 2.45 14 11 C 0.05 1.17 5.50 -17.51 -0.10 1.07 14 12 N -0.76 -20.78 11.88 55.49 0.66 -20.12 14 13 Si 0.94 18.17 29.55 -169.99 -5.02 13.15 14 14 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 15 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 17 N -0.26 -7.83 10.62 29.23 0.31 -7.52 14 18 H 0.10 0.97 8.14 -51.93 -0.42 0.55 14 19 H 0.10 1.03 8.12 -51.93 -0.42 0.60 14 20 H 0.10 0.97 8.14 -51.93 -0.42 0.55 14 21 H 0.19 4.00 8.06 -52.49 -0.42 3.58 14 22 H 0.28 6.84 8.31 -40.82 -0.34 6.51 14 LS Contribution 215.60 15.07 3.25 3.25 Total: -1.00 -34.74 215.60 -4.27 -39.00 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -1.24 Total: 0.22 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -1.52 Total: 8.98 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.78 Total: -47.12 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.52 Total: -17.47 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.15 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -34.74 -4.27 -39.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075546994.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.971 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds