Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34761 * 117.00374 * 2 1 4 4 O 1.21532 * 119.99553 * 0.02562 * 3 2 1 5 5 C 1.47351 * 120.00589 * 180.02562 * 3 2 1 6 6 C 1.36673 * 125.77257 * 180.25230 * 5 3 2 7 7 N 1.35502 * 106.72523 * 180.17278 * 6 5 3 8 8 C 1.37508 * 126.63076 * 179.91111 * 7 6 5 9 9 H 1.07995 * 120.00565 * 5.49578 * 8 7 6 10 10 C 1.39061 * 119.99604 * 185.22447 * 8 7 6 11 11 N 1.31222 * 120.00081 * 354.39965 * 10 8 7 12 12 Si 1.86800 * 119.99808 * 174.39974 * 10 8 7 13 13 H 1.48496 * 109.46949 * 94.97993 * 12 10 8 14 14 H 1.48500 * 109.47139 * 214.97763 * 12 10 8 15 15 H 1.48498 * 109.47164 * 334.97984 * 12 10 8 16 16 N 1.40216 * 106.73431 * 359.64255 * 7 6 5 17 17 N 1.28739 * 108.42712 * 0.22976 * 16 7 6 18 18 H 1.09007 * 109.47330 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47345 * 299.99706 * 1 2 3 20 20 H 1.08998 * 109.47607 * 60.00047 * 1 2 3 21 21 H 1.08002 * 126.63677 * 0.04352 * 6 5 3 22 22 H 0.97000 * 120.00058 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5353 1.2779 -0.0006 6 6 4.2751 2.4271 0.0043 7 7 5.5773 2.0526 -0.0022 8 6 6.6708 2.8863 -0.0022 9 1 6.5361 3.9536 0.0929 10 6 7.9504 2.3546 -0.1190 11 7 8.1230 1.0538 -0.1185 12 14 9.4237 3.4923 -0.2764 13 1 10.0221 3.7156 1.0641 14 1 10.4334 2.8735 -1.1724 15 1 8.9867 4.7921 -0.8462 16 7 5.5942 0.6505 -0.0026 17 7 4.3778 0.2289 -0.0017 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 3.8952 3.4381 0.0098 22 1 9.0156 0.6830 -0.2004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082018663.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = 1.612597 kcal Electronic energy + Delta-G solvation = -11906.830272 eV Core-core repulsion = 9464.344271 eV Total energy + Delta-G solvation = -2442.486001 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.51851 -39.25801 -35.70500 -34.37461 -31.70689 -29.59754 -27.34478 -25.92166 -22.64467 -21.51641 -19.81783 -18.52466 -16.38891 -15.94521 -15.76163 -15.65135 -14.32536 -14.11151 -13.26713 -13.11289 -12.67642 -12.11194 -11.84549 -11.57843 -11.50328 -10.73750 -10.49023 -10.29047 -10.21332 -9.70206 -9.59348 -8.99062 -7.86728 -7.03810 -4.87959 2.30282 2.77804 2.86066 2.94435 3.20872 3.31112 3.59498 4.23411 4.39036 4.61206 5.43388 5.49329 5.51161 5.79698 6.13984 6.35827 6.53266 6.74430 6.92533 7.28317 7.66020 8.22096 8.49313 8.80449 9.77799 9.93331 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.104333 B = 0.008404 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 268.308027 B = 3331.045742 C = 3581.608206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.347 6.347 3 C 0.564 3.436 4 O -0.536 6.536 5 C -0.121 4.121 6 C -0.056 4.056 7 N -0.140 5.140 8 C -0.310 4.310 9 H 0.129 0.871 10 C 0.047 3.953 11 N -0.751 5.751 12 Si 0.949 3.051 13 H -0.266 1.266 14 H -0.270 1.270 15 H -0.258 1.258 16 N -0.077 5.077 17 N -0.263 5.263 18 H 0.095 0.905 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.173 0.827 22 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 2.283 -0.142 4.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.410 3.590 4 O -0.425 6.425 5 C -0.265 4.265 6 C -0.215 4.215 7 N 0.095 4.905 8 C -0.447 4.447 9 H 0.147 0.853 10 C -0.175 4.175 11 N -0.375 5.375 12 Si 0.771 3.229 13 H -0.191 1.191 14 H -0.195 1.195 15 H -0.182 1.182 16 N -0.057 5.057 17 N -0.130 5.130 18 H 0.113 0.887 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.190 0.810 22 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.875 1.016 -0.159 3.053 hybrid contribution -0.104 1.510 -0.044 1.514 sum -2.979 2.525 -0.202 3.910 Atomic orbital electron populations 1.23148 0.77710 1.02925 1.01965 1.86691 1.21955 1.33061 1.84577 1.19876 0.87084 0.80720 0.71319 1.90751 1.66377 1.36120 1.49281 1.19442 0.90301 0.90916 1.25825 1.22295 0.84037 0.99197 1.15976 1.46429 1.04307 1.07452 1.32329 1.20372 0.82559 0.90696 1.51038 0.85321 1.25907 1.00182 0.96888 0.94476 1.70115 1.25235 1.11230 1.30965 0.85572 0.78589 0.79485 0.79297 1.19063 1.19505 1.18154 1.82597 1.09716 0.85839 1.27527 1.74541 0.98210 1.26638 1.13621 0.88662 0.92399 0.92391 0.80999 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.57 101.05 1.07 1.59 14 2 O -0.35 -7.01 10.57 -40.66 -0.43 -7.44 14 3 C 0.56 12.76 7.96 34.44 0.27 13.04 14 4 O -0.54 -12.20 16.65 -19.29 -0.32 -12.52 14 5 C -0.12 -3.05 7.02 -83.54 -0.59 -3.64 14 6 C -0.06 -1.37 11.25 -16.50 -0.19 -1.56 14 7 N -0.14 -3.74 3.73 -11.35 -0.04 -3.78 14 8 C -0.31 -7.63 10.27 -14.70 -0.15 -7.78 14 9 H 0.13 2.76 7.84 -52.49 -0.41 2.35 14 10 C 0.05 1.10 5.50 -17.51 -0.10 1.01 14 11 N -0.75 -19.26 11.89 55.50 0.66 -18.60 14 12 Si 0.95 17.05 29.56 -169.99 -5.02 12.02 14 13 H -0.27 -4.69 7.11 56.52 0.40 -4.29 14 14 H -0.27 -4.82 7.11 56.52 0.40 -4.42 14 15 H -0.26 -4.44 7.11 56.52 0.40 -4.04 14 16 N -0.08 -2.22 11.69 60.35 0.71 -1.52 14 17 N -0.26 -7.25 12.39 32.84 0.41 -6.84 14 18 H 0.09 1.03 8.14 -51.93 -0.42 0.61 14 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 14 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 14 21 H 0.17 3.64 8.06 -52.49 -0.42 3.21 14 22 H 0.29 6.60 8.30 -40.82 -0.34 6.26 14 LS Contribution 218.98 15.07 3.30 3.30 Total: -1.00 -30.65 218.98 -1.66 -32.31 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -1.24 Total: 0.40 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 0.32 Total: 2.67 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 1.73 Total: -30.74 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.75 Total: -19.96 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.02 Total: 12.02 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -30.65 -1.66 -32.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082018663.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.926 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds