Wall clock time and date at job start Mon Mar 30 2020 01:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30040 * 126.20604 * 2 1 4 4 O 1.21286 * 110.46698 * 179.97438 * 3 2 1 5 5 C 1.34044 * 109.74321 * 359.97438 * 4 3 2 6 6 N 1.37692 * 126.66444 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99780 * 359.97287 * 6 5 4 8 8 O 1.21710 * 120.00133 * 0.02562 * 7 6 5 9 9 C 1.46161 * 120.00202 * 180.02562 * 7 6 5 10 10 H 1.08001 * 119.99684 * 0.02562 * 9 7 6 11 11 C 1.40135 * 119.99965 * 180.02562 * 9 7 6 12 12 N 1.30632 * 120.00292 * 359.97438 * 11 9 7 13 13 Si 1.86808 * 119.99958 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46971 * 89.99640 * 13 11 9 15 15 H 1.48493 * 109.47094 * 209.99884 * 13 11 9 16 16 H 1.48498 * 109.46790 * 330.00259 * 13 11 9 17 17 N 1.32103 * 106.67849 * 359.77188 * 5 4 3 18 18 H 1.09001 * 109.46953 * 90.02355 * 1 2 3 19 19 H 1.09000 * 109.47318 * 210.01953 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.02584 * 1 2 3 21 21 H 0.96995 * 120.00131 * 179.97438 * 6 5 4 22 22 H 0.97003 * 119.99628 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2752 1.0493 0.0000 4 8 3.4426 0.7203 0.0005 5 6 3.5362 -0.6169 0.0015 6 7 4.6954 -1.3599 0.0027 7 6 5.8926 -0.7409 0.0026 8 8 5.9491 0.4749 0.0018 9 6 7.1232 -1.5296 0.0034 10 1 7.0730 -2.6084 0.0037 11 6 8.3679 -0.8859 0.0038 12 7 8.4285 0.4190 0.0029 13 14 9.9407 -1.8939 0.0041 14 1 10.3577 -2.1609 -1.3959 15 1 11.0115 -1.1403 0.7044 16 1 9.7029 -3.1819 0.7039 17 7 2.3003 -1.0834 0.0065 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3634 -0.8898 0.5141 20 1 -0.3633 0.8902 0.5134 21 1 4.6504 -2.3288 0.0037 22 1 9.2902 0.8645 0.0028 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082275107.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:46 Heat of formation + Delta-G solvation = 2.776725 kcal Electronic energy + Delta-G solvation = -12030.634104 eV Core-core repulsion = 9588.198584 eV Total energy + Delta-G solvation = -2442.435520 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -46.26304 -40.06650 -36.99400 -35.94306 -34.75076 -32.54425 -29.87951 -28.78530 -24.82832 -24.20009 -21.61168 -19.81188 -19.04220 -18.81659 -17.69253 -17.24415 -16.02469 -15.29827 -14.85581 -14.75404 -14.35321 -13.72859 -13.32570 -13.07266 -12.98312 -12.85397 -12.63662 -12.02631 -11.96556 -11.70940 -11.02166 -10.33881 -9.83853 -8.50268 -7.11561 0.26975 1.25434 1.26503 1.47379 1.47479 1.63610 2.21365 2.30448 2.52360 3.20305 3.37055 3.65889 4.56499 4.64743 4.67007 4.95394 5.15538 5.18920 5.44192 5.55135 5.94095 6.61854 6.76512 7.40537 7.99903 8.43908 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.115743 B = 0.008342 C = 0.007814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 241.856796 B = 3355.670691 C = 3582.383322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.190 3.810 3 N -0.437 5.437 4 O 0.031 5.969 5 C 0.423 3.577 6 N -0.604 5.604 7 C 0.512 3.488 8 O -0.587 6.587 9 C -0.538 4.538 10 H 0.113 0.887 11 C 0.027 3.973 12 N -0.805 5.805 13 Si 1.012 2.988 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.242 1.242 17 N -0.545 5.545 18 H 0.107 0.893 19 H 0.108 0.892 20 H 0.099 0.901 21 H 0.439 0.561 22 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -6.531 -0.016 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 N -0.164 5.164 4 O -0.010 6.010 5 C 0.116 3.884 6 N -0.267 5.267 7 C 0.321 3.679 8 O -0.469 6.469 9 C -0.573 4.573 10 H 0.130 0.870 11 C -0.191 4.191 12 N -0.433 5.433 13 Si 0.830 3.170 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.165 1.165 17 N -0.293 5.293 18 H 0.125 0.875 19 H 0.127 0.873 20 H 0.118 0.882 21 H 0.281 0.719 22 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.950 -4.988 -0.005 8.555 hybrid contribution 0.888 -0.439 -0.020 0.991 sum -6.062 -5.427 -0.025 8.136 Atomic orbital electron populations 1.20374 0.79063 1.05929 1.05767 1.26580 1.02047 0.82922 0.96838 1.74607 0.88839 1.24641 1.28345 1.85583 1.22679 1.22956 1.69736 1.24949 0.89838 0.81839 0.91802 1.43468 0.99962 1.10498 1.72756 1.19302 0.82278 0.88193 0.78090 1.90728 1.85240 1.15807 1.55170 1.21372 0.87833 0.95475 1.52597 0.86951 1.27175 1.04895 0.96127 0.90931 1.70129 1.28562 1.11565 1.33074 0.84782 0.73989 0.78535 0.79672 1.18400 1.19877 1.16451 1.72242 0.96630 1.28508 1.31902 0.87460 0.87320 0.88245 0.71906 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.16 10.51 71.24 0.75 -0.42 14 2 C 0.19 6.95 8.20 138.51 1.14 8.09 14 3 N -0.44 -19.38 12.15 -58.81 -0.71 -20.09 14 4 O 0.03 1.56 9.69 91.84 0.89 2.45 14 5 C 0.42 19.51 8.98 179.18 1.61 21.12 14 6 N -0.60 -27.17 5.35 -429.15 -2.30 -29.46 14 7 C 0.51 28.09 7.69 86.30 0.66 28.76 14 8 O -0.59 -37.94 13.82 16.32 0.23 -37.71 14 9 C -0.54 -27.32 9.53 24.79 0.24 -27.08 14 10 H 0.11 4.82 7.85 -2.91 -0.02 4.80 14 11 C 0.03 1.35 5.50 85.33 0.47 1.82 14 12 N -0.80 -45.80 11.82 21.85 0.26 -45.54 14 13 Si 1.01 36.52 29.56 68.60 2.03 38.55 14 14 H -0.26 -8.95 7.11 99.48 0.71 -8.25 14 15 H -0.27 -9.70 7.11 99.48 0.71 -9.00 14 16 H -0.24 -7.91 7.11 99.48 0.71 -7.20 14 17 N -0.54 -21.70 11.59 -311.76 -3.61 -25.32 14 18 H 0.11 1.90 8.14 -2.39 -0.02 1.88 14 19 H 0.11 1.92 8.14 -2.39 -0.02 1.90 14 20 H 0.10 1.86 8.14 -2.39 -0.02 1.84 14 21 H 0.44 15.86 8.79 -92.71 -0.82 15.04 14 22 H 0.28 14.52 8.29 -92.71 -0.77 13.75 14 Total: -1.00 -72.17 215.08 2.10 -70.07 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.46 Total: 14.76 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 4.86 Total: 32.28 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -6.36 Total: -120.41 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: 1.12 Total: -35.26 kcal Atomic # 14 Polarization: 36.52 SS G_CDS: 2.03 Total: 38.55 kcal Total: -72.17 2.10 -70.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275107.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.848 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds