Wall clock time and date at job start Mon Mar 30 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99841 * 2 1 4 4 C 1.50697 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.30801 * 125.15002 * 89.96433 * 4 3 2 6 6 C 1.33333 * 109.25070 * 179.75434 * 5 4 3 7 7 C 1.50702 * 126.45870 * 180.28928 * 6 5 4 8 8 C 1.39413 * 107.08521 * 0.43272 * 6 5 4 9 9 C 1.39845 * 126.87687 * 179.83303 * 8 6 5 10 10 H 1.08006 * 119.99872 * 5.86577 * 9 8 6 11 11 C 1.40163 * 120.00321 * 185.86658 * 9 8 6 12 12 N 1.30793 * 120.00144 * 6.41859 * 11 9 8 13 13 Si 1.86800 * 119.99979 * 186.41501 * 11 9 8 14 14 H 1.48501 * 109.47484 * 265.01101 * 13 11 9 15 15 H 1.48497 * 109.47178 * 25.01468 * 13 11 9 16 16 H 1.48505 * 109.47205 * 145.01652 * 13 11 9 17 17 O 1.34013 * 125.15790 * 269.99929 * 4 3 2 18 18 H 1.08995 * 109.47235 * 299.99466 * 1 2 3 19 19 H 1.08993 * 109.47318 * 59.99910 * 1 2 3 20 20 H 1.09004 * 109.46784 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46658 * 60.00128 * 3 2 1 22 22 H 1.08993 * 109.47203 * 300.00466 * 3 2 1 23 23 H 1.08998 * 109.47452 * 270.17136 * 7 6 5 24 24 H 1.09004 * 109.47051 * 30.17506 * 7 6 5 25 25 H 1.08996 * 109.46999 * 150.16854 * 7 6 5 26 26 H 0.97003 * 120.00501 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2635 1.1262 -1.0685 6 6 5.5421 1.0307 -0.7027 7 6 6.7326 0.9438 -1.6226 8 6 5.5699 1.0230 0.6911 9 6 6.7018 0.9332 1.5074 10 1 7.6880 0.9553 1.0675 11 6 6.5565 0.8143 2.8964 12 7 5.3673 0.6612 3.4189 13 14 8.0614 0.8746 4.0014 14 1 8.5214 -0.5081 4.2874 15 1 9.1460 1.6261 3.3202 16 1 7.7133 1.5538 5.2754 17 8 4.2813 1.1258 1.0966 18 1 -0.3633 0.5137 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.6885 1.8464 0.8900 22 1 1.6885 1.8464 -0.8899 23 1 6.9417 -0.1019 -1.8485 24 1 6.5172 1.4792 -2.5473 25 1 7.6001 1.3911 -1.1374 26 1 5.2667 0.5793 4.3802 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082403155.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:37 Heat of formation + Delta-G solvation = -49.343884 kcal Electronic energy + Delta-G solvation = -12306.909500 eV Core-core repulsion = 9965.754204 eV Total energy + Delta-G solvation = -2341.155296 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.93848 -37.19969 -33.91813 -33.12857 -30.67283 -27.98474 -27.38418 -25.51716 -23.13605 -20.01368 -19.47747 -17.41586 -16.03523 -15.54799 -15.23716 -14.94974 -14.30773 -13.85950 -13.19345 -12.44522 -12.06119 -11.98525 -11.76602 -11.44692 -11.31568 -10.92454 -10.89443 -10.69150 -10.32019 -9.64380 -9.24164 -9.21122 -8.79689 -7.37819 -6.99420 -4.56406 2.77476 2.96710 3.02172 3.27868 3.76690 3.91913 4.51426 4.96945 5.04696 5.48547 5.61403 5.69119 5.83585 5.90332 6.12042 6.38703 6.70291 6.73678 6.85372 6.95683 7.27974 7.61061 7.65804 8.06161 8.24454 8.47011 8.53500 9.68948 9.99131 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.011156 C = 0.008936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.142713 B = 2509.325124 C = 3132.630182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.191 3.809 4 C 0.009 3.991 5 N -0.431 5.431 6 C -0.208 4.208 7 C -0.023 4.023 8 C 0.188 3.812 9 C -0.428 4.428 10 H 0.110 0.890 11 C 0.065 3.935 12 N -0.766 5.766 13 Si 0.926 3.074 14 H -0.266 1.266 15 H -0.257 1.257 16 H -0.273 1.273 17 O -0.185 6.185 18 H 0.037 0.963 19 H 0.037 0.963 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 0.977 -0.226 2.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.114 3.886 4 C -0.189 4.189 5 N -0.162 5.162 6 C -0.336 4.336 7 C -0.081 4.081 8 C 0.132 3.868 9 C -0.457 4.457 10 H 0.127 0.873 11 C -0.157 4.157 12 N -0.391 5.391 13 Si 0.749 3.251 14 H -0.191 1.191 15 H -0.180 1.180 16 H -0.198 1.198 17 O -0.073 6.073 18 H 0.056 0.944 19 H 0.056 0.944 20 H 0.099 0.901 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.953 0.810 -0.592 3.119 hybrid contribution 0.555 0.123 1.318 1.435 sum -2.399 0.933 0.726 2.674 Atomic orbital electron populations 1.22658 0.82036 1.02214 0.99471 1.88073 1.18596 1.28719 1.95257 1.19950 0.84138 0.84257 1.00246 1.23990 0.93462 1.20968 0.80485 1.69189 1.03094 1.12861 1.31067 1.21361 0.91782 1.28605 0.91810 1.19415 0.93142 0.99461 0.96062 1.20377 0.82050 0.92383 0.91973 1.18785 0.91897 1.44575 0.90460 0.87263 1.26219 0.97996 0.92238 0.99272 1.69788 1.24014 1.30882 1.14437 0.85985 0.80676 0.79542 0.78858 1.19074 1.18006 1.19791 1.84685 1.16613 1.72307 1.33673 0.94393 0.94442 0.90131 0.92413 0.91402 0.94215 0.93726 0.92910 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 15 2 O -0.39 -8.23 10.69 -35.23 -0.38 -8.61 15 3 C 0.19 4.07 6.56 36.00 0.24 4.30 15 4 C 0.01 0.25 7.92 -12.72 -0.10 0.15 15 5 N -0.43 -11.96 11.23 -6.32 -0.07 -12.03 15 6 C -0.21 -5.69 7.27 -81.50 -0.59 -6.28 15 7 C -0.02 -0.52 10.24 36.01 0.37 -0.15 15 8 C 0.19 5.42 6.80 -38.54 -0.26 5.16 15 9 C -0.43 -11.44 9.09 -38.26 -0.35 -11.79 15 10 H 0.11 2.67 7.32 -52.48 -0.38 2.28 15 11 C 0.07 1.64 5.49 -17.27 -0.09 1.54 15 12 N -0.77 -20.43 12.12 55.56 0.67 -19.76 15 13 Si 0.93 18.12 29.57 -169.99 -5.03 13.10 15 14 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 15 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 17 O -0.18 -5.48 9.25 3.10 0.03 -5.46 15 18 H 0.04 0.49 8.14 -51.93 -0.42 0.07 15 19 H 0.04 0.47 8.14 -51.93 -0.42 0.05 15 20 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.05 1.08 7.56 -51.93 -0.39 0.68 15 26 H 0.29 6.82 8.30 -40.82 -0.34 6.49 15 LS Contribution 238.72 15.07 3.60 3.60 Total: -1.00 -32.24 238.72 -3.72 -35.97 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -2.87 Total: -1.35 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 0.32 Total: -5.45 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.60 Total: -31.79 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.35 Total: -14.06 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.24 -3.72 -35.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403155.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.378 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds