Wall clock time and date at job start Mon Mar 30 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99841 * 2 1 4 4 C 1.50697 * 109.47041 * 179.97438 * 3 2 1 5 5 N 1.30801 * 125.15002 * 89.96433 * 4 3 2 6 6 C 1.33333 * 109.25070 * 179.75434 * 5 4 3 7 7 C 1.50702 * 126.45870 * 180.28928 * 6 5 4 8 8 C 1.39413 * 107.08521 * 0.43272 * 6 5 4 9 9 C 1.39845 * 126.87687 * 179.83303 * 8 6 5 10 10 H 1.08006 * 119.99872 * 5.86577 * 9 8 6 11 11 C 1.40163 * 120.00321 * 185.86658 * 9 8 6 12 12 N 1.30793 * 120.00144 * 6.41859 * 11 9 8 13 13 Si 1.86800 * 119.99979 * 186.41501 * 11 9 8 14 14 H 1.48501 * 109.47484 * 265.01101 * 13 11 9 15 15 H 1.48497 * 109.47178 * 25.01468 * 13 11 9 16 16 H 1.48505 * 109.47205 * 145.01652 * 13 11 9 17 17 O 1.34013 * 125.15790 * 269.99929 * 4 3 2 18 18 H 1.08995 * 109.47235 * 299.99466 * 1 2 3 19 19 H 1.08993 * 109.47318 * 59.99910 * 1 2 3 20 20 H 1.09004 * 109.46784 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46658 * 60.00128 * 3 2 1 22 22 H 1.08993 * 109.47203 * 300.00466 * 3 2 1 23 23 H 1.08998 * 109.47452 * 270.17136 * 7 6 5 24 24 H 1.09004 * 109.47051 * 30.17506 * 7 6 5 25 25 H 1.08996 * 109.46999 * 150.16854 * 7 6 5 26 26 H 0.97003 * 120.00501 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2635 1.1262 -1.0685 6 6 5.5421 1.0307 -0.7027 7 6 6.7326 0.9438 -1.6226 8 6 5.5699 1.0230 0.6911 9 6 6.7018 0.9332 1.5074 10 1 7.6880 0.9553 1.0675 11 6 6.5565 0.8143 2.8964 12 7 5.3673 0.6612 3.4189 13 14 8.0614 0.8746 4.0014 14 1 8.5214 -0.5081 4.2874 15 1 9.1460 1.6261 3.3202 16 1 7.7133 1.5538 5.2754 17 8 4.2813 1.1258 1.0966 18 1 -0.3633 0.5137 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.6885 1.8464 0.8900 22 1 1.6885 1.8464 -0.8899 23 1 6.9417 -0.1019 -1.8485 24 1 6.5172 1.4792 -2.5473 25 1 7.6001 1.3911 -1.1374 26 1 5.2667 0.5793 4.3802 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082403155.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:37 Heat of formation + Delta-G solvation = -74.379621 kcal Electronic energy + Delta-G solvation = -12307.995132 eV Core-core repulsion = 9965.754204 eV Total energy + Delta-G solvation = -2342.240927 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.00042 -38.72634 -35.86392 -35.18912 -32.58142 -29.65433 -29.27342 -26.91154 -25.05209 -21.99641 -21.49801 -19.44030 -17.64326 -17.39053 -16.84684 -16.50327 -16.28566 -15.64415 -14.93441 -14.12491 -13.77679 -13.68629 -13.30251 -13.06949 -13.00234 -12.78664 -12.45880 -12.32053 -12.01943 -11.47981 -11.24734 -10.88526 -10.68810 -9.44016 -8.88605 -6.58997 0.98733 1.37346 1.54404 1.58157 2.05679 2.13286 2.64244 3.05322 3.28726 3.80044 4.18975 4.38282 4.54197 4.55682 4.60808 4.81725 4.86436 4.94887 5.02615 5.11976 5.36463 5.63790 6.03514 6.20951 6.27735 6.44659 6.54606 7.61307 8.13462 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.011156 C = 0.008936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.142713 B = 2509.325124 C = 3132.630182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.195 3.805 4 C -0.009 4.009 5 N -0.450 5.450 6 C -0.234 4.234 7 C -0.018 4.018 8 C 0.147 3.853 9 C -0.450 4.450 10 H 0.126 0.874 11 C 0.018 3.982 12 N -0.808 5.808 13 Si 1.013 2.987 14 H -0.257 1.257 15 H -0.244 1.244 16 H -0.265 1.265 17 O -0.212 6.212 18 H 0.054 0.946 19 H 0.060 0.940 20 H 0.098 0.902 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 1.086 0.294 2.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C 0.118 3.882 4 C -0.208 4.208 5 N -0.180 5.180 6 C -0.361 4.361 7 C -0.076 4.076 8 C 0.092 3.908 9 C -0.479 4.479 10 H 0.144 0.856 11 C -0.200 4.200 12 N -0.434 5.434 13 Si 0.830 3.170 14 H -0.181 1.181 15 H -0.167 1.167 16 H -0.189 1.189 17 O -0.102 6.102 18 H 0.072 0.928 19 H 0.078 0.922 20 H 0.116 0.884 21 H 0.091 0.909 22 H 0.111 0.889 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.361 0.916 -0.104 2.535 hybrid contribution 0.234 0.062 1.138 1.164 sum -2.127 0.979 1.034 2.560 Atomic orbital electron populations 1.22982 0.78581 1.04064 1.01374 1.87983 1.22309 1.28516 1.95628 1.20106 0.81069 0.84895 1.02110 1.25263 0.95755 1.19908 0.79858 1.69210 1.03563 1.13808 1.31454 1.22135 0.93016 1.28652 0.92314 1.19489 0.91804 1.00454 0.95826 1.21057 0.82501 0.93983 0.93272 1.19320 0.92081 1.44759 0.91693 0.85587 1.27405 1.01654 0.90666 1.00306 1.69868 1.26804 1.31131 1.15560 0.84732 0.75899 0.80046 0.76332 1.18093 1.16661 1.18905 1.84648 1.17449 1.72939 1.35123 0.92755 0.92185 0.88396 0.90937 0.88937 0.93257 0.92326 0.91446 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 15 2 O -0.42 -17.78 10.69 -148.98 -1.59 -19.37 15 3 C 0.19 8.24 6.56 71.24 0.47 8.71 15 4 C -0.01 -0.50 7.92 88.26 0.70 0.20 15 5 N -0.45 -25.31 11.23 -288.41 -3.24 -28.54 15 6 C -0.23 -12.99 7.27 42.61 0.31 -12.68 15 7 C -0.02 -0.80 10.24 71.24 0.73 -0.07 15 8 C 0.15 8.67 6.80 22.94 0.16 8.82 15 9 C -0.45 -24.19 9.09 23.13 0.21 -23.98 15 10 H 0.13 6.07 7.32 -2.91 -0.02 6.05 15 11 C 0.02 0.90 5.49 85.32 0.47 1.37 15 12 N -0.81 -43.51 12.12 21.87 0.27 -43.25 15 13 Si 1.01 36.04 29.57 68.60 2.03 38.06 15 14 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 15 H -0.24 -8.11 7.11 99.48 0.71 -7.40 15 16 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 17 O -0.21 -12.97 9.25 -11.83 -0.11 -13.08 15 18 H 0.05 1.29 8.14 -2.39 -0.02 1.27 15 19 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.10 2.29 8.14 -2.39 -0.02 2.28 15 21 H 0.07 2.78 8.14 -2.39 -0.02 2.76 15 22 H 0.09 3.36 8.14 -2.39 -0.02 3.34 15 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.06 2.34 8.14 -2.38 -0.02 2.32 15 25 H 0.07 2.69 7.56 -2.39 -0.02 2.67 15 26 H 0.30 14.16 8.30 -92.71 -0.77 13.39 15 Total: -1.00 -70.95 238.72 2.82 -68.13 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.18 Total: 13.73 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.29 Total: -15.69 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -2.97 Total: -71.79 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.70 Total: -32.45 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.06 kcal Total: -70.95 2.82 -68.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403155.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.248 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds