Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 N 1.29513 * 124.56130 * 300.02773 * 4 2 1 6 6 C 1.30676 * 117.63042 * 179.97438 * 5 4 2 7 7 C 1.38585 * 113.55222 * 359.97438 * 6 5 4 8 8 C 1.40038 * 126.25546 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99725 * 179.97438 * 8 7 6 10 10 C 1.40073 * 119.99835 * 359.97438 * 8 7 6 11 11 N 1.30860 * 120.00461 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99778 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47088 * 59.99853 * 12 10 8 14 14 H 1.48502 * 109.47112 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47084 * 300.00006 * 12 10 8 16 16 S 1.70883 * 124.56010 * 119.72383 * 4 2 1 17 17 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 20 20 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 24 24 H 1.08009 * 123.22420 * 180.02562 * 6 5 4 25 25 H 0.96997 * 120.00833 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7740 -0.3458 2.4462 6 6 2.2804 -1.0627 3.4144 7 6 3.0382 -2.1351 2.9715 8 6 3.6989 -3.0711 3.7768 9 1 4.2639 -3.8713 3.3221 10 6 3.6268 -2.9693 5.1720 11 7 2.9417 -2.0000 5.7229 12 14 4.5075 -4.2183 6.2462 13 1 5.9638 -4.1794 5.9584 14 1 4.2771 -3.8911 7.6763 15 1 3.9821 -5.5770 5.9580 16 16 3.0133 -2.1094 1.2097 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8934 -0.5138 -0.8899 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 2.1227 -0.8411 4.4597 25 1 2.8921 -1.9293 6.6890 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082689022.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -11.377310 kcal Electronic energy + Delta-G solvation = -10239.027547 eV Core-core repulsion = 8342.271476 eV Total energy + Delta-G solvation = -1896.756071 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.62027 -36.57614 -35.22805 -31.08462 -27.92256 -27.19327 -25.05572 -22.47422 -20.54111 -18.52251 -18.18596 -16.68019 -15.78677 -15.20357 -14.92030 -14.75688 -13.93989 -13.60741 -13.30262 -13.26430 -13.05982 -12.81337 -12.25174 -11.99157 -11.83515 -11.75317 -11.56466 -11.42091 -9.93027 -9.85032 -9.15389 -8.77066 -6.53614 0.57918 1.22720 1.40581 1.53295 1.54982 1.67690 2.13853 2.52453 3.10325 3.94094 4.19209 4.40122 4.56363 4.84360 4.86532 4.94227 5.03730 5.09347 5.25915 5.45993 5.47345 5.60100 5.82839 6.22128 6.44302 6.61050 7.84481 8.07443 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.077704 B = 0.009741 C = 0.009183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.255726 B = 2873.889633 C = 3048.383809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.006 3.994 3 C -0.126 4.126 4 C -0.109 4.109 5 N -0.445 5.445 6 C -0.185 4.185 7 C -0.018 4.018 8 C -0.404 4.404 9 H 0.096 0.904 10 C 0.023 3.977 11 N -0.796 5.796 12 Si 1.015 2.985 13 H -0.253 1.253 14 H -0.261 1.261 15 H -0.253 1.253 16 S -0.052 6.052 17 H 0.041 0.959 18 H 0.085 0.915 19 H 0.039 0.961 20 H 0.081 0.919 21 H 0.039 0.961 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.179 0.821 25 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -0.752 -3.887 3.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 C -0.184 4.184 4 C -0.381 4.381 5 N -0.157 5.157 6 C -0.337 4.337 7 C -0.140 4.140 8 C -0.440 4.440 9 H 0.114 0.886 10 C -0.197 4.197 11 N -0.420 5.420 12 Si 0.832 3.168 13 H -0.177 1.177 14 H -0.185 1.185 15 H -0.177 1.177 16 S 0.199 5.801 17 H 0.060 0.940 18 H 0.104 0.896 19 H 0.059 0.941 20 H 0.100 0.900 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.195 0.805 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.465 -0.680 -4.443 4.518 hybrid contribution 0.136 -0.184 1.547 1.564 sum 0.601 -0.864 -2.895 3.081 Atomic orbital electron populations 1.21689 0.93781 1.01088 1.01880 1.19472 0.96090 0.95271 0.90799 1.21688 1.00139 0.94725 1.01878 1.26034 1.12995 1.02659 0.96379 1.65320 1.20506 1.30262 0.99570 1.22981 1.11892 0.99615 0.99179 1.23648 0.99179 0.98889 0.92255 1.19425 1.24110 1.08584 0.91890 0.88617 1.27249 0.94842 0.98353 0.99235 1.69526 1.29804 1.28152 1.14558 0.84750 0.78861 0.77115 0.76037 1.17725 1.18501 1.17720 1.82728 1.56785 1.33318 1.07275 0.94028 0.89645 0.94142 0.90034 0.94143 0.94022 0.89647 0.80501 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.17 71.98 0.66 -3.54 15 2 C 0.01 0.22 3.35 -11.54 -0.04 0.19 15 3 C -0.13 -4.19 9.17 71.98 0.66 -3.53 15 4 C -0.11 -5.31 5.89 88.45 0.52 -4.78 15 5 N -0.45 -24.56 10.46 -188.21 -1.97 -26.52 15 6 C -0.19 -10.87 10.55 84.95 0.90 -9.97 15 7 C -0.02 -1.03 6.30 22.79 0.14 -0.89 15 8 C -0.40 -21.13 9.42 23.15 0.22 -20.91 15 9 H 0.10 4.63 7.85 -2.91 -0.02 4.61 15 10 C 0.02 1.10 5.50 85.28 0.47 1.57 15 11 N -0.80 -40.19 10.18 21.86 0.22 -39.97 15 12 Si 1.01 35.04 29.56 68.60 2.03 37.06 15 13 H -0.25 -8.41 7.11 99.48 0.71 -7.71 15 14 H -0.26 -8.44 7.11 99.48 0.71 -7.73 15 15 H -0.25 -8.41 7.11 99.48 0.71 -7.70 15 16 S -0.05 -2.53 23.11 -56.49 -1.31 -3.84 15 17 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 18 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 19 H 0.04 1.48 8.14 -2.38 -0.02 1.46 15 20 H 0.08 2.74 8.12 -2.39 -0.02 2.72 15 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.18 10.80 5.36 -2.91 -0.02 10.79 15 25 H 0.30 13.35 8.30 -92.71 -0.77 12.59 15 Total: -1.00 -61.28 232.43 3.68 -57.60 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.18 Total: 17.55 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 3.53 Total: -41.88 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -1.75 Total: -66.50 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.06 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -1.31 Total: -3.84 kcal Total: -61.28 3.68 -57.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082689022.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.220 kcal (2) G-P(sol) polarization free energy of solvation -61.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds