Wall clock time and date at job start Mon Mar 30 2020 02:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.66497 * 2 1 4 4 C 1.54225 * 110.60458 * 237.06667 * 2 1 3 5 5 C 1.51311 * 103.55844 * 241.48469 * 4 2 1 6 6 O 1.21224 * 125.39702 * 180.02562 * 5 4 2 7 7 N 1.33876 * 109.20610 * 359.97438 * 5 4 2 8 8 C 1.37498 * 122.76288 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99868 * 324.77586 * 8 7 5 10 10 C 1.38917 * 120.00089 * 144.77809 * 8 7 5 11 11 N 1.31360 * 120.00155 * 339.61966 * 10 8 7 12 12 Si 1.86796 * 120.00011 * 159.61441 * 10 8 7 13 13 H 1.48494 * 109.47252 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47189 * 120.00302 * 12 10 8 15 15 H 1.48501 * 109.47236 * 239.99831 * 12 10 8 16 16 C 1.33872 * 114.47696 * 0.02562 * 7 5 4 17 17 O 1.21218 * 125.40270 * 179.73021 * 16 7 5 18 18 H 1.09000 * 109.46859 * 298.51640 * 1 2 3 19 19 H 1.08996 * 109.47366 * 58.52045 * 1 2 3 20 20 H 1.09002 * 109.47009 * 178.52446 * 1 2 3 21 21 H 1.08998 * 109.47238 * 181.48209 * 3 2 1 22 22 H 1.08999 * 109.46840 * 301.48058 * 3 2 1 23 23 H 1.08998 * 109.46875 * 61.47812 * 3 2 1 24 24 H 1.09005 * 110.60789 * 122.96659 * 4 2 1 25 25 H 1.09002 * 110.74416 * 0.06545 * 4 2 1 26 26 H 0.97001 * 120.00169 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4316 0.0000 4 6 2.0728 -0.7848 -1.2116 5 6 2.8549 -1.9158 -0.5802 6 8 3.4528 -2.7795 -1.1852 7 7 2.7829 -1.8107 0.7525 8 6 3.3979 -2.6988 1.6032 9 1 3.4646 -3.7434 1.3372 10 6 3.9335 -2.2524 2.8047 11 7 4.2198 -0.9803 2.9639 12 14 4.2463 -3.4611 4.1942 13 1 3.8419 -4.8240 3.7651 14 1 5.6914 -3.4588 4.5364 15 1 3.4550 -3.0615 5.3855 16 6 2.0630 -0.7698 1.1888 17 8 1.8650 -0.4910 2.3517 18 1 -0.3633 0.4906 0.9030 19 1 -0.3634 0.5366 -0.8764 20 1 -0.3633 -1.0273 -0.0265 21 1 3.1594 1.4090 -0.0266 22 1 1.6960 1.9609 -0.8764 23 1 1.7390 1.9447 0.9029 24 1 2.7275 -0.1554 -1.8144 25 1 1.2545 -1.1754 -1.8166 26 1 4.5941 -0.6687 3.8028 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083685942.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:33 Heat of formation + Delta-G solvation = -92.218429 kcal Electronic energy + Delta-G solvation = -13034.649407 eV Core-core repulsion = 10691.634931 eV Total energy + Delta-G solvation = -2343.014476 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.52963 -39.03730 -36.72562 -36.21617 -33.84854 -29.60915 -28.23911 -27.07669 -24.80831 -21.92074 -20.78814 -19.06126 -17.56962 -16.96106 -16.66882 -16.32264 -15.55562 -14.98763 -14.75006 -14.49816 -14.45876 -13.69107 -13.20367 -13.05981 -12.87501 -12.86572 -12.52871 -12.34026 -12.10244 -11.89738 -11.39251 -10.92747 -10.46787 -9.97045 -8.55690 -6.39910 0.95047 1.31407 1.36252 1.49060 2.12150 2.36495 2.70609 3.01790 3.41599 3.67030 3.79994 4.03629 4.31335 4.70181 4.74629 4.83329 4.90453 4.98539 5.11163 5.23796 5.27995 5.38548 5.83316 6.07116 6.68287 6.96566 7.21595 7.77976 8.54577 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043329 B = 0.015340 C = 0.012872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.066863 B = 1824.875020 C = 2174.786165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.131 4.131 5 C 0.477 3.523 6 O -0.564 6.564 7 N -0.431 5.431 8 C -0.411 4.411 9 H 0.085 0.915 10 C 0.019 3.981 11 N -0.859 5.859 12 Si 0.991 3.009 13 H -0.259 1.259 14 H -0.266 1.266 15 H -0.274 1.274 16 C 0.496 3.504 17 O -0.513 6.513 18 H 0.057 0.943 19 H 0.112 0.888 20 H 0.053 0.947 21 H 0.039 0.961 22 H 0.112 0.888 23 H 0.054 0.946 24 H 0.134 0.866 25 H 0.142 0.858 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 4.841 -5.891 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.177 4.177 4 C -0.170 4.170 5 C 0.270 3.730 6 O -0.445 6.445 7 N -0.160 5.160 8 C -0.536 4.536 9 H 0.102 0.898 10 C -0.189 4.189 11 N -0.492 5.492 12 Si 0.812 3.188 13 H -0.183 1.183 14 H -0.191 1.191 15 H -0.200 1.200 16 C 0.287 3.713 17 O -0.388 6.388 18 H 0.076 0.924 19 H 0.130 0.870 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.131 0.869 23 H 0.073 0.927 24 H 0.152 0.848 25 H 0.160 0.840 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.334 4.694 -5.423 9.569 hybrid contribution 0.670 -0.719 1.044 1.434 sum -5.664 3.975 -4.379 8.189 Atomic orbital electron populations 1.21712 0.88977 1.02800 1.04355 1.21552 0.99791 0.97316 0.91240 1.21666 1.00123 0.91900 1.04014 1.22663 1.01900 0.94558 0.97897 1.21741 0.81054 0.87175 0.83048 1.90528 1.46038 1.40184 1.67737 1.42667 1.40434 1.25335 1.07547 1.19610 1.41026 0.91078 1.01933 0.89759 1.26251 0.93158 0.98241 1.01226 1.69958 1.36123 1.16771 1.26341 0.84961 0.78317 0.78367 0.77124 1.18294 1.19068 1.19953 1.21293 0.77579 0.81813 0.90639 1.90496 1.57302 1.69378 1.21609 0.92375 0.86959 0.92769 0.94156 0.86947 0.92684 0.84839 0.83987 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 8.45 71.98 0.61 -2.50 15 2 C -0.10 -3.22 1.05 -52.31 -0.06 -3.27 15 3 C -0.12 -3.47 8.45 71.98 0.61 -2.86 15 4 C -0.13 -4.13 6.31 30.46 0.19 -3.93 15 5 C 0.48 22.81 8.02 87.99 0.71 23.52 15 6 O -0.56 -30.35 17.64 -2.86 -0.05 -30.40 15 7 N -0.43 -23.44 2.65 -583.53 -1.54 -24.99 15 8 C -0.41 -24.65 9.32 83.97 0.78 -23.87 15 9 H 0.08 5.12 7.91 -2.91 -0.02 5.09 15 10 C 0.02 1.13 4.65 84.93 0.40 1.52 15 11 N -0.86 -51.59 11.31 21.65 0.24 -51.35 15 12 Si 0.99 45.43 29.60 68.60 2.03 47.46 15 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 14 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 16 C 0.50 24.76 6.01 88.00 0.53 25.29 15 17 O -0.51 -29.44 15.21 -2.84 -0.04 -29.48 15 18 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 19 H 0.11 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 21 H 0.04 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.11 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 24 H 0.13 3.47 7.74 -2.38 -0.02 3.45 15 25 H 0.14 3.36 7.75 -2.39 -0.02 3.35 15 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 15 Total: -1.00 -77.17 230.55 5.58 -71.59 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.17 Total: 3.28 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 3.77 Total: 13.89 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -1.30 Total: -76.34 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -0.09 Total: -59.88 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.17 5.58 -71.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083685942.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.629 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds