Wall clock time and date at job start Mon Mar 30 2020 02:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47139 * 2 1 4 4 C 1.50700 * 109.47093 * 119.99856 * 2 1 3 5 5 H 1.07996 * 120.00018 * 119.99809 * 4 2 1 6 6 C 1.37883 * 119.99963 * 300.00176 * 4 2 1 7 7 N 1.31511 * 119.99739 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00014 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47190 * 89.99847 * 8 6 4 10 10 H 1.48498 * 109.47022 * 210.00156 * 8 6 4 11 11 H 1.48509 * 109.46930 * 330.00013 * 8 6 4 12 12 C 1.50695 * 109.47195 * 239.99741 * 2 1 3 13 13 C 1.33389 * 125.20134 * 89.71558 * 12 2 1 14 14 C 1.38433 * 114.92022 * 180.26674 * 13 12 2 15 15 C 1.33388 * 114.91766 * 0.02562 * 14 13 12 16 16 S 1.75879 * 109.59837 * 0.02562 * 15 14 13 17 17 H 1.09003 * 109.47498 * 180.02562 * 1 2 3 18 18 H 1.09002 * 109.47404 * 300.00234 * 1 2 3 19 19 H 1.09006 * 109.47157 * 59.99897 * 1 2 3 20 20 H 1.00897 * 110.99975 * 180.02562 * 3 2 1 21 21 H 1.00896 * 110.99552 * 303.95302 * 3 2 1 22 22 H 0.97006 * 119.99552 * 179.97438 * 7 6 4 23 23 H 1.07998 * 122.54399 * 0.25181 * 13 12 2 24 24 H 1.08000 * 122.53671 * 180.02562 * 14 13 12 25 25 H 1.08006 * 125.20143 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8746 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1774 1.4922 12 6 2.0323 -0.7104 -1.2304 13 6 2.2835 -0.1299 -2.4048 14 6 2.7332 -0.9868 -3.3946 15 6 2.8466 -2.2632 -3.0242 16 16 2.3680 -2.4335 -1.3403 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 3.0283 1.4119 -0.0004 21 1 1.6441 1.9012 -0.7814 22 1 1.9039 -0.5273 4.4376 23 1 2.1463 0.9283 -2.5709 24 1 2.9739 -0.6476 -4.3913 25 1 3.1812 -3.0689 -3.6609 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331038.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:55 Heat of formation + Delta-G solvation = 44.048590 kcal Electronic energy + Delta-G solvation = -10649.865704 eV Core-core repulsion = 8755.513081 eV Total energy + Delta-G solvation = -1894.352624 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.83599 -35.29122 -31.87479 -28.51614 -27.94374 -25.21259 -23.48163 -20.40188 -18.25818 -16.64393 -16.35346 -14.98619 -14.71299 -14.15599 -13.40057 -12.86335 -12.31836 -12.25832 -12.08730 -11.59385 -11.26700 -11.04357 -10.45852 -10.25245 -10.01615 -9.61358 -9.19265 -8.56007 -7.99498 -7.80910 -7.23773 -6.05224 -4.16923 1.68227 2.36695 2.81604 3.31451 3.46475 3.60719 3.88744 4.64997 5.25300 5.49096 5.55643 5.75498 5.99158 6.09002 6.37132 6.49959 6.58742 6.64461 6.88539 6.96788 7.08391 7.61045 8.11749 8.28479 8.63712 8.91981 9.58365 11.03990 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.054764 B = 0.014038 C = 0.012288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.161987 B = 1994.040422 C = 2278.128404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 N -0.822 5.822 4 C -0.524 4.524 5 H 0.078 0.922 6 C 0.088 3.912 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.299 1.299 10 H -0.313 1.313 11 H -0.193 1.193 12 C -0.132 4.132 13 C -0.191 4.191 14 C -0.130 4.130 15 C -0.264 4.264 16 S 0.134 5.866 17 H 0.056 0.944 18 H 0.056 0.944 19 H 0.031 0.969 20 H 0.335 0.665 21 H 0.308 0.692 22 H 0.264 0.736 23 H 0.126 0.874 24 H 0.124 0.876 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 1.009 -10.859 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.175 3.825 3 N -0.352 5.352 4 C -0.562 4.562 5 H 0.095 0.905 6 C -0.117 4.117 7 N -0.531 5.531 8 Si 0.707 3.293 9 H -0.227 1.227 10 H -0.242 1.242 11 H -0.115 1.115 12 C -0.253 4.253 13 C -0.221 4.221 14 C -0.161 4.161 15 C -0.399 4.399 16 S 0.398 5.602 17 H 0.075 0.925 18 H 0.074 0.926 19 H 0.050 0.950 20 H 0.149 0.851 21 H 0.120 0.880 22 H 0.073 0.927 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.280 -0.149 -8.995 9.087 hybrid contribution 0.090 1.510 -1.685 2.264 sum -1.190 1.360 -10.681 10.832 Atomic orbital electron populations 1.22072 0.96241 1.01090 0.99594 1.17579 0.91509 0.84510 0.88903 1.60045 1.13639 1.14020 1.47459 1.20792 1.34553 1.12817 0.88067 0.90453 1.24988 0.94849 0.96709 0.95178 1.69944 1.44562 1.40441 0.98130 0.87254 0.78035 0.85536 0.78523 1.22738 1.24233 1.11457 1.26168 1.02320 0.96561 1.00250 1.19923 1.08433 1.00726 0.92985 1.19964 1.03309 0.92865 0.99976 1.25696 1.12517 1.00639 1.01066 1.84530 1.63285 1.07978 1.04437 0.92522 0.92581 0.94994 0.85132 0.87960 0.92653 0.85578 0.85833 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.24 37.16 0.31 -2.51 15 2 C 0.27 5.98 0.74 -133.91 -0.10 5.88 15 3 N -0.82 -16.73 5.26 -1.14 -0.01 -16.73 15 4 C -0.52 -14.21 8.51 -34.44 -0.29 -14.50 15 5 H 0.08 2.28 6.91 -52.49 -0.36 1.91 15 6 C 0.09 2.49 5.45 -17.82 -0.10 2.40 15 7 N -0.89 -27.29 13.96 55.43 0.77 -26.51 15 8 Si 0.88 21.74 23.86 -169.99 -4.06 17.68 15 9 H -0.30 -7.44 6.87 56.52 0.39 -7.05 15 10 H -0.31 -8.09 7.11 56.52 0.40 -7.69 15 11 H -0.19 -4.39 5.16 56.52 0.29 -4.10 15 12 C -0.13 -2.68 5.22 -36.01 -0.19 -2.87 15 13 C -0.19 -3.37 9.54 -41.20 -0.39 -3.77 15 14 C -0.13 -2.08 10.18 -41.20 -0.42 -2.50 15 15 C -0.26 -4.27 11.23 29.04 0.33 -3.95 15 16 S 0.13 2.58 21.80 -107.50 -2.34 0.24 15 17 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 18 H 0.06 1.26 3.27 -51.93 -0.17 1.09 15 19 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.34 6.73 8.98 -39.29 -0.35 6.37 15 21 H 0.31 5.39 7.91 -39.29 -0.31 5.08 15 22 H 0.26 7.64 8.31 -40.82 -0.34 7.31 15 23 H 0.13 1.99 7.15 -52.49 -0.38 1.61 15 24 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 25 H 0.15 2.00 8.06 -52.48 -0.42 1.58 15 LS Contribution 218.05 15.07 3.29 3.29 Total: -1.00 -29.86 218.05 -5.72 -35.59 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -2.52 Total: 8.28 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.86 Total: -21.82 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.77 Total: -43.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.06 Total: 17.68 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.34 Total: 0.24 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -29.86 -5.72 -35.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331038.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.634 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds