Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29034 * 124.91330 * 2 1 4 4 C 1.31776 * 117.12603 * 179.73408 * 3 2 1 5 5 C 1.50693 * 122.75377 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47056 * 25.01971 * 5 4 3 7 7 C 1.52997 * 109.47488 * 145.02561 * 5 4 3 8 8 C 1.50701 * 109.47138 * 265.02475 * 5 4 3 9 9 H 1.07999 * 120.00190 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00391 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99886 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 120.00430 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47335 * 59.99752 * 12 10 8 14 14 H 1.48499 * 109.47411 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47012 * 299.99664 * 12 10 8 16 16 C 1.33639 * 114.49979 * 359.97438 * 4 3 2 17 17 S 1.70972 * 124.92008 * 179.69305 * 2 1 3 18 18 H 1.09001 * 109.47444 * 90.00508 * 1 2 3 19 19 H 1.09009 * 109.47100 * 209.99885 * 1 2 3 20 20 H 1.08999 * 109.47544 * 329.99881 * 1 2 3 21 21 H 1.09001 * 109.47230 * 180.02562 * 7 5 4 22 22 H 1.09007 * 109.46772 * 299.99307 * 7 5 4 23 23 H 1.08993 * 109.47373 * 60.00022 * 7 5 4 24 24 H 0.96993 * 120.00208 * 179.97438 * 11 10 8 25 25 H 1.08002 * 126.03942 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8796 0.0054 5 6 4.5306 2.0247 0.0056 6 1 4.0574 2.9075 0.4357 7 6 5.7572 1.6467 0.8382 8 6 4.9560 2.3220 -1.4093 9 1 4.5573 1.7396 -2.2267 10 6 5.8543 3.3375 -1.6602 11 7 6.3394 4.0471 -0.6648 12 14 6.3811 3.7065 -3.4139 13 1 5.1902 4.0732 -4.2218 14 1 7.3464 4.8349 -3.4138 15 1 7.0260 2.5041 -4.0003 16 6 3.9354 -0.4004 0.0108 17 16 2.4857 -1.4019 0.0075 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3634 -0.8901 0.5139 20 1 -0.3634 0.8899 0.5138 21 1 6.4655 2.4752 0.8386 22 1 5.4495 1.4318 1.8616 23 1 6.2303 0.7640 0.4080 24 1 6.9716 4.7613 -0.8412 25 1 4.9545 -0.7578 0.0154 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331044.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = 29.994473 kcal Electronic energy + Delta-G solvation = -10304.178310 eV Core-core repulsion = 8409.216254 eV Total energy + Delta-G solvation = -1894.962056 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.17214 -34.36462 -31.88240 -29.82106 -27.12456 -25.19159 -23.62677 -20.63408 -18.70321 -16.90677 -16.21870 -14.84288 -14.33682 -14.28563 -13.11013 -13.04073 -12.77048 -12.10616 -11.81979 -11.43021 -11.25923 -10.88818 -10.68282 -10.38687 -10.10922 -9.66505 -9.13044 -8.94385 -8.75057 -8.37076 -7.83079 -6.01576 -4.07971 1.41079 2.00012 2.38595 3.32401 3.36209 3.39074 3.70020 4.44116 4.69548 5.29372 5.44008 5.64715 5.80523 6.07161 6.11408 6.40953 6.82362 6.84788 7.08706 7.28577 7.66413 7.83272 8.05058 8.34732 8.62031 8.92226 9.55580 11.04480 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.051114 B = 0.010154 C = 0.009681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.661618 B = 2756.763519 C = 2891.686958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.038 3.962 3 N -0.462 5.462 4 C 0.115 3.885 5 C 0.107 3.893 6 H 0.046 0.954 7 C -0.133 4.133 8 C -0.504 4.504 9 H 0.054 0.946 10 C 0.063 3.937 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C -0.258 4.258 17 S 0.039 5.961 18 H 0.079 0.921 19 H 0.073 0.927 20 H 0.084 0.916 21 H 0.090 0.910 22 H 0.011 0.989 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 -8.573 1.641 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.241 4.241 3 N -0.177 5.177 4 C -0.015 4.015 5 C 0.085 3.915 6 H 0.064 0.936 7 C -0.191 4.191 8 C -0.543 4.543 9 H 0.072 0.928 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.395 4.395 17 S 0.290 5.710 18 H 0.098 0.902 19 H 0.092 0.908 20 H 0.103 0.897 21 H 0.108 0.892 22 H 0.030 0.970 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.155 -8.974 1.680 11.600 hybrid contribution 0.985 0.840 -1.031 1.655 sum -6.171 -8.134 0.650 10.230 Atomic orbital electron populations 1.20336 0.86066 1.03426 1.03270 1.26955 1.01223 0.90875 1.05049 1.66195 1.05698 1.30832 1.14980 1.21240 0.89406 0.95770 0.95053 1.17534 0.88391 0.88726 0.96820 0.93623 1.21835 1.00533 1.01585 0.95183 1.20926 1.25367 1.16740 0.91238 0.92803 1.24919 0.96008 0.95670 0.97231 1.69868 1.31225 1.21197 1.30574 0.86578 0.78404 0.77839 0.84737 1.20238 1.21153 1.20248 1.26668 1.01337 0.95239 1.16252 1.83464 1.00720 1.14812 1.71983 0.90202 0.90783 0.89713 0.89180 0.97030 0.95178 0.92779 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.46 36.00 0.38 -0.52 15 2 C 0.04 0.68 7.39 -13.46 -0.10 0.58 15 3 N -0.46 -10.38 10.53 -8.06 -0.08 -10.46 15 4 C 0.11 2.70 5.66 -84.23 -0.48 2.22 15 5 C 0.11 2.81 2.71 -92.93 -0.25 2.56 15 6 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 7 C -0.13 -3.24 8.47 37.16 0.31 -2.93 15 8 C -0.50 -14.29 8.55 -34.44 -0.29 -14.58 15 9 H 0.05 1.55 7.74 -52.49 -0.41 1.14 15 10 C 0.06 1.77 5.30 -17.82 -0.09 1.67 15 11 N -0.89 -25.52 11.32 55.43 0.63 -24.89 15 12 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 14 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 16 C -0.26 -5.26 10.36 29.12 0.30 -4.95 15 17 S 0.04 0.64 23.18 -107.50 -2.49 -1.85 15 18 H 0.08 0.92 8.14 -51.93 -0.42 0.49 15 19 H 0.07 0.74 8.14 -51.92 -0.42 0.32 15 20 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 21 H 0.09 2.38 6.07 -51.93 -0.32 2.07 15 22 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 15 23 H 0.03 0.68 6.93 -51.93 -0.36 0.32 15 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 25 H 0.17 3.27 6.99 -52.49 -0.37 2.91 15 LS Contribution 231.54 15.07 3.49 3.49 Total: -1.00 -30.08 231.54 -6.40 -36.49 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -2.70 Total: -3.40 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -0.22 Total: -15.96 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.54 Total: -35.36 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.49 Total: -1.85 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.08 -6.40 -36.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331044.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.480 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds