Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29034 * 124.91330 * 2 1 4 4 C 1.31776 * 117.12603 * 179.73408 * 3 2 1 5 5 C 1.50693 * 122.75377 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47056 * 25.01971 * 5 4 3 7 7 C 1.52997 * 109.47488 * 145.02561 * 5 4 3 8 8 C 1.50701 * 109.47138 * 265.02475 * 5 4 3 9 9 H 1.07999 * 120.00190 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00391 * 179.97438 * 8 5 4 11 11 N 1.31519 * 119.99886 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 120.00430 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47335 * 59.99752 * 12 10 8 14 14 H 1.48499 * 109.47411 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47012 * 299.99664 * 12 10 8 16 16 C 1.33639 * 114.49979 * 359.97438 * 4 3 2 17 17 S 1.70972 * 124.92008 * 179.69305 * 2 1 3 18 18 H 1.09001 * 109.47444 * 90.00508 * 1 2 3 19 19 H 1.09009 * 109.47100 * 209.99885 * 1 2 3 20 20 H 1.08999 * 109.47544 * 329.99881 * 1 2 3 21 21 H 1.09001 * 109.47230 * 180.02562 * 7 5 4 22 22 H 1.09007 * 109.46772 * 299.99307 * 7 5 4 23 23 H 1.08993 * 109.47373 * 60.00022 * 7 5 4 24 24 H 0.96993 * 120.00208 * 179.97438 * 11 10 8 25 25 H 1.08002 * 126.03942 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8796 0.0054 5 6 4.5306 2.0247 0.0056 6 1 4.0574 2.9075 0.4357 7 6 5.7572 1.6467 0.8382 8 6 4.9560 2.3220 -1.4093 9 1 4.5573 1.7396 -2.2267 10 6 5.8543 3.3375 -1.6602 11 7 6.3394 4.0471 -0.6648 12 14 6.3811 3.7065 -3.4139 13 1 5.1902 4.0732 -4.2218 14 1 7.3464 4.8349 -3.4138 15 1 7.0260 2.5041 -4.0003 16 6 3.9354 -0.4004 0.0108 17 16 2.4857 -1.4019 0.0075 18 1 -0.3634 -0.0001 -1.0276 19 1 -0.3634 -0.8901 0.5139 20 1 -0.3634 0.8899 0.5138 21 1 6.4655 2.4752 0.8386 22 1 5.4495 1.4318 1.8616 23 1 6.2303 0.7640 0.4080 24 1 6.9716 4.7613 -0.8412 25 1 4.9545 -0.7578 0.0154 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084331044.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = 10.733513 kcal Electronic energy + Delta-G solvation = -10305.013528 eV Core-core repulsion = 8409.216254 eV Total energy + Delta-G solvation = -1895.797274 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.75709 -36.29564 -33.63507 -31.44568 -28.67380 -27.26777 -25.29680 -22.31068 -20.32513 -18.50241 -18.31580 -16.72887 -15.94744 -15.76186 -14.76278 -14.72714 -14.20696 -13.52141 -13.37378 -13.00653 -12.97938 -12.81468 -12.52721 -12.30032 -12.11795 -11.53072 -11.16193 -10.54167 -10.41124 -10.21807 -9.37703 -8.13980 -6.29368 -0.05771 0.60489 0.87903 1.39503 1.41709 1.49657 2.05771 2.43531 3.11947 3.38098 4.24381 4.45280 4.64208 4.71524 4.73118 4.90989 4.95483 5.12382 5.14467 5.43079 5.54662 5.78124 5.98255 6.24937 6.75467 7.08027 7.37938 8.90735 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.051114 B = 0.010154 C = 0.009681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.661618 B = 2756.763519 C = 2891.686958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.033 3.967 3 N -0.515 5.515 4 C 0.083 3.917 5 C 0.105 3.895 6 H 0.001 0.999 7 C -0.120 4.120 8 C -0.525 4.525 9 H 0.042 0.958 10 C 0.017 3.983 11 N -0.915 5.915 12 Si 0.960 3.040 13 H -0.276 1.276 14 H -0.277 1.277 15 H -0.268 1.268 16 C -0.276 4.276 17 S 0.136 5.864 18 H 0.097 0.903 19 H 0.109 0.891 20 H 0.085 0.915 21 H 0.065 0.935 22 H 0.026 0.974 23 H 0.041 0.959 24 H 0.265 0.735 25 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.751 -10.449 0.985 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.245 4.245 3 N -0.231 5.231 4 C -0.046 4.046 5 C 0.084 3.916 6 H 0.019 0.981 7 C -0.178 4.178 8 C -0.563 4.563 9 H 0.061 0.939 10 C -0.182 4.182 11 N -0.554 5.554 12 Si 0.785 3.215 13 H -0.202 1.202 14 H -0.202 1.202 15 H -0.193 1.193 16 C -0.414 4.414 17 S 0.388 5.612 18 H 0.115 0.885 19 H 0.127 0.873 20 H 0.104 0.896 21 H 0.084 0.916 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.093 -10.873 1.032 13.594 hybrid contribution 1.167 1.330 -0.787 1.937 sum -6.926 -9.543 0.244 11.794 Atomic orbital electron populations 1.20605 0.82472 1.05241 1.04908 1.27857 1.03424 0.90917 1.02321 1.66155 1.05626 1.33443 1.17877 1.20824 0.89861 0.95890 0.98070 1.17314 0.89644 0.88777 0.95853 0.98077 1.21637 0.99307 1.00893 0.95937 1.21149 1.25873 1.17226 0.92053 0.93920 1.25716 0.95878 0.95333 1.01287 1.69994 1.31452 1.21432 1.32476 0.85580 0.78033 0.78079 0.79790 1.20179 1.20202 1.19257 1.26831 1.03786 0.95553 1.15253 1.83032 0.96701 1.11564 1.69856 0.88456 0.87251 0.89635 0.91647 0.95484 0.94028 0.92577 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.46 71.23 0.75 -0.86 15 2 C 0.03 1.11 7.39 88.52 0.65 1.76 15 3 N -0.51 -23.18 10.53 -179.42 -1.89 -25.07 15 4 C 0.08 3.96 5.66 41.52 0.24 4.20 15 5 C 0.11 5.77 2.71 -12.29 -0.03 5.74 15 6 H 0.00 0.07 8.14 -2.38 -0.02 0.05 15 7 C -0.12 -5.97 8.47 71.98 0.61 -5.36 15 8 C -0.52 -30.57 8.55 25.60 0.22 -30.35 15 9 H 0.04 2.51 7.74 -2.91 -0.02 2.49 15 10 C 0.02 0.97 5.30 84.65 0.45 1.41 15 11 N -0.91 -53.72 11.32 21.45 0.24 -53.48 15 12 Si 0.96 44.63 29.54 68.60 2.03 46.65 15 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 15 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 16 C -0.28 -10.99 10.36 66.78 0.69 -10.30 15 17 S 0.14 4.05 23.18 -56.49 -1.31 2.74 15 18 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 19 H 0.11 1.66 8.14 -2.38 -0.02 1.64 15 20 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.06 3.57 6.07 -2.39 -0.01 3.55 15 22 H 0.03 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.04 1.91 6.93 -2.39 -0.02 1.90 15 24 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 25 H 0.18 6.60 6.99 -2.91 -0.02 6.58 15 Total: -1.00 -66.61 231.54 3.82 -62.79 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.18 Total: 0.11 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 3.57 Total: -33.76 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -1.65 Total: -78.54 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.31 Total: 2.74 kcal Total: -66.61 3.82 -62.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331044.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.525 kcal (2) G-P(sol) polarization free energy of solvation -66.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds