Wall clock time and date at job start Mon Mar 30 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31776 * 122.74838 * 2 1 4 4 C 1.29027 * 117.12568 * 180.02562 * 3 2 1 5 5 S 1.70977 * 110.16578 * 359.97438 * 4 3 2 6 6 C 1.33635 * 122.74873 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.03862 * 0.03642 * 6 2 1 8 8 H 1.08998 * 109.47231 * 359.97438 * 7 6 2 9 9 C 1.53000 * 109.47246 * 239.97796 * 7 6 2 10 10 C 1.50710 * 109.47149 * 119.98339 * 7 6 2 11 11 H 1.08004 * 119.99600 * 359.97438 * 10 7 6 12 12 C 1.37865 * 120.00232 * 179.97438 * 10 7 6 13 13 N 1.31522 * 120.00164 * 0.02562 * 12 10 7 14 14 Si 1.86795 * 120.00243 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47324 * 90.00208 * 14 12 10 16 16 H 1.48506 * 109.47303 * 210.00195 * 14 12 10 17 17 H 1.48497 * 109.47116 * 330.00212 * 14 12 10 18 18 H 1.09001 * 109.47671 * 270.00063 * 1 2 3 19 19 H 1.09003 * 109.47133 * 30.00257 * 1 2 3 20 20 H 1.08999 * 109.47079 * 150.00052 * 1 2 3 21 21 H 1.07998 * 124.92077 * 180.02562 * 4 3 2 22 22 H 1.08993 * 109.47365 * 179.97438 * 9 7 6 23 23 H 1.08998 * 109.47637 * 300.00525 * 9 7 6 24 24 H 1.09010 * 109.46534 * 60.00504 * 9 7 6 25 25 H 0.96995 * 120.00586 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5039 0.9819 -0.0005 5 16 3.9332 -0.6731 -0.0004 6 6 2.2299 -1.1239 0.0005 7 6 1.6846 -2.5288 0.0004 8 1 0.5951 -2.4957 0.0002 9 6 2.1722 -3.2653 1.2496 10 6 2.1655 -3.2542 -1.2301 11 1 2.8019 -2.7483 -1.9410 12 6 1.7930 -4.5636 -1.4481 13 7 1.0175 -5.1795 -0.5826 14 14 2.3884 -5.4624 -2.9735 15 1 3.6769 -6.1389 -2.6781 16 1 1.3793 -6.4744 -3.3773 17 1 2.5823 -4.4887 -4.0777 18 1 -0.3634 0.0000 1.0276 19 1 -0.3633 0.8900 -0.5139 20 1 -0.3633 -0.8900 -0.5138 21 1 4.2059 1.8026 -0.0002 22 1 1.7775 -4.2813 1.2498 23 1 3.2617 -3.2984 1.2500 24 1 1.8243 -2.7406 2.1396 25 1 0.7557 -6.1008 -0.7358 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331050.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:21 Heat of formation + Delta-G solvation = 26.960679 kcal Electronic energy + Delta-G solvation = -10442.487140 eV Core-core repulsion = 8547.393530 eV Total energy + Delta-G solvation = -1895.093611 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.11136 -34.67639 -31.73259 -29.89443 -26.25920 -25.22103 -24.07912 -20.97061 -18.05916 -17.36035 -16.05226 -15.16532 -14.42214 -14.11453 -12.96746 -12.78325 -12.40635 -11.97593 -11.80815 -11.57529 -11.01262 -10.94547 -10.72824 -10.44653 -10.12894 -9.99702 -9.17400 -8.91297 -8.47266 -8.39426 -7.82951 -6.11352 -4.19370 1.55327 2.16942 2.60951 3.25226 3.32082 3.35839 3.51605 4.35743 4.88356 5.19962 5.71689 5.95168 6.14110 6.18770 6.41908 6.48886 6.75060 6.88120 7.01005 7.13667 7.54671 7.74156 7.94967 8.22384 8.41609 8.81909 9.46138 10.94124 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.044408 B = 0.012210 C = 0.011338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.369552 B = 2292.568661 C = 2468.928973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.002 3.998 3 N -0.465 5.465 4 C -0.032 4.032 5 S 0.103 5.897 6 C -0.128 4.128 7 C 0.103 3.897 8 H 0.054 0.946 9 C -0.134 4.134 10 C -0.514 4.514 11 H 0.058 0.942 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.079 0.921 21 H 0.186 0.814 22 H 0.091 0.909 23 H 0.029 0.971 24 H 0.011 0.989 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 6.116 1.519 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.127 4.127 3 N -0.180 5.180 4 C -0.330 4.330 5 S 0.356 5.644 6 C -0.249 4.249 7 C 0.082 3.918 8 H 0.072 0.928 9 C -0.192 4.192 10 C -0.552 4.552 11 H 0.076 0.924 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.098 0.902 21 H 0.202 0.798 22 H 0.109 0.891 23 H 0.048 0.952 24 H 0.030 0.970 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.484 6.005 1.548 7.113 hybrid contribution -0.406 -0.404 -0.842 1.018 sum 3.078 5.601 0.706 6.430 Atomic orbital electron populations 1.20222 0.87747 1.02760 1.01894 1.20105 0.97966 0.86398 1.08214 1.66045 1.05198 1.32315 1.14410 1.27898 0.95294 1.00390 1.09371 1.83865 1.10093 1.01895 1.68580 1.26652 0.93245 1.02699 1.02339 1.17566 0.96587 0.82286 0.95335 0.92794 1.21846 0.98932 1.03461 0.94961 1.21101 1.31431 0.96957 1.05719 0.92359 1.24929 0.94780 0.97303 0.96661 1.69867 1.35212 1.12219 1.35312 0.86534 0.78571 0.79523 0.83127 1.20496 1.21053 1.19807 0.91888 0.91910 0.90211 0.79764 0.89074 0.95171 0.96952 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 9.91 36.00 0.36 -0.85 15 2 C 0.00 0.05 6.74 -84.23 -0.57 -0.52 15 3 N -0.47 -9.28 10.53 -11.90 -0.13 -9.40 15 4 C -0.03 -0.56 12.23 51.58 0.63 0.07 15 5 S 0.10 1.95 23.05 -107.50 -2.48 -0.52 15 6 C -0.13 -2.83 5.08 -35.92 -0.18 -3.01 15 7 C 0.10 2.52 2.56 -92.92 -0.24 2.28 15 8 H 0.05 1.39 6.40 -51.93 -0.33 1.06 15 9 C -0.13 -3.16 8.91 37.16 0.33 -2.83 15 10 C -0.51 -13.70 8.49 -34.44 -0.29 -13.99 15 11 H 0.06 1.57 7.74 -52.48 -0.41 1.17 15 12 C 0.07 1.75 5.30 -17.82 -0.09 1.65 15 13 N -0.89 -24.38 11.32 55.43 0.63 -23.75 15 14 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 18 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 19 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.08 1.49 6.75 -51.93 -0.35 1.14 15 21 H 0.19 2.43 8.06 -52.49 -0.42 2.01 15 22 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 23 H 0.03 0.68 8.08 -51.93 -0.42 0.26 15 24 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 15 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 230.81 15.07 3.48 3.48 Total: -1.00 -28.25 230.81 -6.22 -34.48 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -2.65 Total: -2.89 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -0.06 Total: -17.19 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.50 Total: -33.15 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.48 Total: -0.52 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.25 -6.22 -34.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331050.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.438 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds