Wall clock time and date at job start Mon Mar 30 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38432 * 122.53651 * 2 1 4 4 C 1.33387 * 114.91840 * 180.27104 * 3 2 1 5 5 S 1.75878 * 109.59675 * 359.77408 * 4 3 2 6 6 C 1.33389 * 122.54588 * 179.82687 * 2 1 3 7 7 C 1.50703 * 125.19863 * 0.02562 * 6 2 1 8 8 H 1.08994 * 109.47275 * 344.71695 * 7 6 2 9 9 N 1.46898 * 109.46797 * 224.71210 * 7 6 2 10 10 C 1.50700 * 109.47148 * 104.71471 * 7 6 2 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.46986 * 270.00126 * 14 12 10 16 16 H 1.48496 * 109.47029 * 30.00143 * 14 12 10 17 17 H 1.48499 * 109.47352 * 149.99973 * 14 12 10 18 18 H 1.09002 * 109.47287 * 270.16886 * 1 2 3 19 19 H 1.08993 * 109.47651 * 30.17257 * 1 2 3 20 20 H 1.09008 * 109.46694 * 150.17135 * 1 2 3 21 21 H 1.07996 * 122.53912 * 0.04146 * 3 2 1 22 22 H 1.08005 * 125.20266 * 179.79367 * 4 3 2 23 23 H 1.00892 * 111.00332 * 300.00256 * 9 7 6 24 24 H 1.00905 * 110.99665 * 63.96030 * 9 7 6 25 25 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0057 5 16 3.9386 -0.7303 -0.0050 6 6 2.2245 -1.1244 0.0034 7 6 1.6538 -2.5192 0.0071 8 1 0.5987 -2.4793 0.2774 9 7 2.3789 -3.3423 0.9840 10 6 1.7981 -3.1246 -1.3654 11 1 2.2575 -2.5564 -2.1607 12 6 1.3445 -4.4042 -1.6056 13 7 0.7854 -5.0964 -0.6371 14 14 1.5239 -5.1550 -3.3067 15 1 0.3183 -4.8425 -4.1153 16 1 2.7260 -4.5916 -3.9721 17 1 1.6702 -6.6277 -3.1849 18 1 -0.3634 0.0030 1.0277 19 1 -0.3634 0.8883 -0.5165 20 1 -0.3633 -0.8916 -0.5112 21 1 1.7964 2.1464 0.0007 22 1 4.3077 1.7824 -0.0098 23 1 3.3601 -3.3949 0.7552 24 1 2.2443 -2.9937 1.9213 25 1 0.6926 -4.7066 0.2464 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331061.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:34 Heat of formation + Delta-G solvation = 19.635519 kcal Electronic energy + Delta-G solvation = -10462.158757 eV Core-core repulsion = 8566.747503 eV Total energy + Delta-G solvation = -1895.411254 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.92638 -34.73210 -31.34772 -30.04700 -27.13270 -25.05315 -22.69810 -21.13560 -17.78728 -17.20063 -16.13431 -14.93989 -14.35917 -13.70244 -13.52540 -12.97775 -12.91649 -12.07171 -11.74112 -11.43759 -11.31602 -11.14842 -10.70960 -10.47429 -10.07132 -9.98363 -8.90386 -8.34718 -7.94450 -7.67617 -7.54239 -6.20755 -4.04032 1.65938 2.27395 2.67729 3.28870 3.47216 3.51211 3.66843 4.59239 5.38821 5.43053 5.66255 5.88475 5.94222 6.04145 6.13429 6.27922 6.46589 6.58228 6.95065 7.11132 7.22579 7.91519 8.23693 8.61130 8.69931 9.02225 9.78895 11.19082 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.043600 B = 0.012125 C = 0.011687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.042698 B = 2308.695185 C = 2395.321041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.151 4.151 3 C -0.119 4.119 4 C -0.250 4.250 5 S 0.075 5.925 6 C -0.135 4.135 7 C 0.264 3.736 8 H 0.052 0.948 9 N -0.828 5.828 10 C -0.608 4.608 11 H 0.048 0.952 12 C 0.039 3.961 13 N -0.890 5.890 14 Si 1.066 2.934 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.285 1.285 18 H 0.056 0.944 19 H 0.055 0.945 20 H 0.074 0.926 21 H 0.127 0.873 22 H 0.152 0.848 23 H 0.326 0.674 24 H 0.304 0.696 25 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 9.361 1.765 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 C -0.150 4.150 4 C -0.385 4.385 5 S 0.339 5.661 6 C -0.255 4.255 7 C 0.153 3.847 8 H 0.069 0.931 9 N -0.355 5.355 10 C -0.647 4.647 11 H 0.066 0.934 12 C -0.171 4.171 13 N -0.523 5.523 14 Si 0.895 3.105 15 H -0.216 1.216 16 H -0.216 1.216 17 H -0.210 1.210 18 H 0.075 0.925 19 H 0.074 0.926 20 H 0.093 0.907 21 H 0.145 0.855 22 H 0.170 0.830 23 H 0.138 0.862 24 H 0.114 0.886 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.409 6.540 0.658 7.404 hybrid contribution -0.257 3.346 1.006 3.504 sum 3.152 9.886 1.664 10.509 Atomic orbital electron populations 1.20400 0.90346 1.02529 1.01170 1.18788 0.97331 0.91623 1.08397 1.19985 0.92948 0.98770 1.03342 1.25332 0.99453 0.99221 1.14485 1.84049 1.08537 0.99633 1.73897 1.26341 0.94138 1.02613 1.02374 1.18083 0.93260 0.79880 0.93458 0.93080 1.59469 1.15312 1.57094 1.03601 1.21722 1.46819 1.02679 0.93503 0.93379 1.25636 0.93123 0.93788 1.04531 1.70535 1.37712 1.39710 1.04389 0.83604 0.76154 0.76131 0.74578 1.21575 1.21642 1.21044 0.92517 0.92605 0.90709 0.85485 0.83001 0.86152 0.88559 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.59 36.00 0.35 -1.14 15 2 C -0.15 -2.95 5.80 -106.25 -0.62 -3.56 15 3 C -0.12 -2.04 9.98 -41.21 -0.41 -2.45 15 4 C -0.25 -4.16 11.23 29.04 0.33 -3.83 15 5 S 0.08 1.42 22.67 -107.50 -2.44 -1.02 15 6 C -0.13 -2.91 5.33 -36.00 -0.19 -3.11 15 7 C 0.26 6.50 2.35 -70.02 -0.16 6.34 15 8 H 0.05 1.34 6.53 -51.93 -0.34 1.00 15 9 N -0.83 -19.20 7.75 -6.65 -0.05 -19.25 15 10 C -0.61 -16.92 8.71 -34.44 -0.30 -17.22 15 11 H 0.05 1.38 7.74 -52.49 -0.41 0.97 15 12 C 0.04 1.11 5.39 -17.82 -0.10 1.02 15 13 N -0.89 -26.64 13.51 55.43 0.75 -25.89 15 14 Si 1.07 25.38 29.90 -169.99 -5.08 20.29 15 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 18 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.05 0.83 8.13 -51.93 -0.42 0.41 15 20 H 0.07 1.46 6.94 -51.92 -0.36 1.10 15 21 H 0.13 1.81 8.06 -52.49 -0.42 1.39 15 22 H 0.15 2.05 8.06 -52.48 -0.42 1.63 15 23 H 0.33 7.43 8.40 -39.30 -0.33 7.10 15 24 H 0.30 6.25 9.06 -39.29 -0.36 5.89 15 25 H 0.29 8.65 6.39 -40.82 -0.26 8.39 15 LS Contribution 230.99 15.07 3.48 3.48 Total: -1.00 -29.86 230.99 -6.99 -36.85 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.54 Total: 9.49 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -1.11 Total: -23.96 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.70 Total: -45.14 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.29 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.44 Total: -1.02 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.86 -6.99 -36.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331061.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.484 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds