Wall clock time and date at job start Mon Mar 30 2020 02:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38432 * 122.53651 * 2 1 4 4 C 1.33387 * 114.91840 * 180.27104 * 3 2 1 5 5 S 1.75878 * 109.59675 * 359.77408 * 4 3 2 6 6 C 1.33389 * 122.54588 * 179.82687 * 2 1 3 7 7 C 1.50703 * 125.19863 * 0.02562 * 6 2 1 8 8 H 1.08994 * 109.47275 * 344.71695 * 7 6 2 9 9 N 1.46898 * 109.46797 * 224.71210 * 7 6 2 10 10 C 1.50700 * 109.47148 * 104.71471 * 7 6 2 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.46986 * 270.00126 * 14 12 10 16 16 H 1.48496 * 109.47029 * 30.00143 * 14 12 10 17 17 H 1.48499 * 109.47352 * 149.99973 * 14 12 10 18 18 H 1.09002 * 109.47287 * 270.16886 * 1 2 3 19 19 H 1.08993 * 109.47651 * 30.17257 * 1 2 3 20 20 H 1.09008 * 109.46694 * 150.17135 * 1 2 3 21 21 H 1.07996 * 122.53912 * 0.04146 * 3 2 1 22 22 H 1.08005 * 125.20266 * 179.79367 * 4 3 2 23 23 H 1.00892 * 111.00332 * 300.00256 * 9 7 6 24 24 H 1.00905 * 110.99665 * 63.96030 * 9 7 6 25 25 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0057 5 16 3.9386 -0.7303 -0.0050 6 6 2.2245 -1.1244 0.0034 7 6 1.6538 -2.5192 0.0071 8 1 0.5987 -2.4793 0.2774 9 7 2.3789 -3.3423 0.9840 10 6 1.7981 -3.1246 -1.3654 11 1 2.2575 -2.5564 -2.1607 12 6 1.3445 -4.4042 -1.6056 13 7 0.7854 -5.0964 -0.6371 14 14 1.5239 -5.1550 -3.3067 15 1 0.3183 -4.8425 -4.1153 16 1 2.7260 -4.5916 -3.9721 17 1 1.6702 -6.6277 -3.1849 18 1 -0.3634 0.0030 1.0277 19 1 -0.3634 0.8883 -0.5165 20 1 -0.3633 -0.8916 -0.5112 21 1 1.7964 2.1464 0.0007 22 1 4.3077 1.7824 -0.0098 23 1 3.3601 -3.3949 0.7552 24 1 2.2443 -2.9937 1.9213 25 1 0.6926 -4.7066 0.2464 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084331061.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:33 Heat of formation + Delta-G solvation = -0.362415 kcal Electronic energy + Delta-G solvation = -10463.025933 eV Core-core repulsion = 8566.747503 eV Total energy + Delta-G solvation = -1896.278429 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.42932 -36.60225 -33.36526 -31.51996 -28.80324 -26.97724 -24.32980 -22.83920 -19.29575 -19.13111 -17.79902 -16.63574 -16.01006 -15.55861 -15.23627 -14.58914 -14.48565 -13.71711 -13.45552 -13.07765 -12.82140 -12.63970 -12.54045 -12.24984 -11.92806 -11.54219 -10.88369 -10.49273 -9.63680 -9.23023 -9.18748 -8.41599 -6.27301 0.20423 0.82616 1.22968 1.54240 1.62673 1.80184 1.86364 2.61857 3.29450 4.11005 4.14817 4.19620 4.49879 4.64139 4.75441 4.77824 4.98773 5.12034 5.24571 5.66082 5.70547 5.88245 6.15770 6.59870 6.72423 6.95574 7.62777 8.95306 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.043600 B = 0.012125 C = 0.011687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.042698 B = 2308.695185 C = 2395.321041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.145 4.145 3 C -0.129 4.129 4 C -0.225 4.225 5 S 0.064 5.936 6 C -0.186 4.186 7 C 0.271 3.729 8 H 0.025 0.975 9 N -0.834 5.834 10 C -0.615 4.615 11 H 0.033 0.967 12 C -0.009 4.009 13 N -0.917 5.917 14 Si 1.110 2.890 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.284 1.284 18 H 0.071 0.929 19 H 0.085 0.915 20 H 0.043 0.957 21 H 0.164 0.836 22 H 0.192 0.808 23 H 0.327 0.673 24 H 0.318 0.682 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 11.340 1.352 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.157 4.157 3 C -0.160 4.160 4 C -0.360 4.360 5 S 0.327 5.673 6 C -0.305 4.305 7 C 0.160 3.840 8 H 0.043 0.957 9 N -0.362 5.362 10 C -0.654 4.654 11 H 0.051 0.949 12 C -0.212 4.212 13 N -0.552 5.552 14 Si 0.933 3.067 15 H -0.201 1.201 16 H -0.204 1.204 17 H -0.209 1.209 18 H 0.090 0.910 19 H 0.103 0.897 20 H 0.062 0.938 21 H 0.182 0.818 22 H 0.209 0.791 23 H 0.140 0.860 24 H 0.130 0.870 25 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.025 8.535 0.255 9.440 hybrid contribution -0.423 2.868 1.184 3.132 sum 3.602 11.403 1.439 12.045 Atomic orbital electron populations 1.20428 0.89473 1.02373 1.02111 1.19242 0.98360 0.92073 1.06026 1.20263 0.92981 0.99317 1.03392 1.25822 1.00219 0.98260 1.11693 1.83998 1.06861 1.02171 1.74244 1.25947 0.96086 1.01639 1.06818 1.17649 0.92272 0.82012 0.92094 0.95711 1.59258 1.15188 1.57480 1.04269 1.21975 1.45861 1.02653 0.94864 0.94869 1.26939 0.92456 0.94682 1.07172 1.70648 1.39901 1.40205 1.04449 0.83028 0.77028 0.75434 0.71171 1.20080 1.20437 1.20936 0.91040 0.89662 0.93810 0.81826 0.79125 0.86032 0.87000 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.86 9.59 71.23 0.68 -2.17 15 2 C -0.15 -5.44 5.80 -20.92 -0.12 -5.56 15 3 C -0.13 -3.93 9.98 21.22 0.21 -3.72 15 4 C -0.23 -6.61 11.23 66.72 0.75 -5.86 15 5 S 0.06 2.32 22.67 -56.49 -1.28 1.04 15 6 C -0.19 -7.97 5.33 24.59 0.13 -7.84 15 7 C 0.27 13.65 2.35 43.42 0.10 13.75 15 8 H 0.03 1.37 6.53 -2.39 -0.02 1.36 15 9 N -0.83 -39.55 7.75 -174.96 -1.36 -40.91 15 10 C -0.61 -34.88 8.71 25.60 0.22 -34.66 15 11 H 0.03 1.93 7.74 -2.91 -0.02 1.91 15 12 C -0.01 -0.49 5.39 84.65 0.46 -0.04 15 13 N -0.92 -56.09 13.51 21.45 0.29 -55.80 15 14 Si 1.11 51.37 29.90 68.60 2.05 53.42 15 15 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 15 17 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 18 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 19 H 0.08 2.33 8.13 -2.39 -0.02 2.31 15 20 H 0.04 1.73 6.94 -2.38 -0.02 1.72 15 21 H 0.16 3.79 8.06 -2.91 -0.02 3.76 15 22 H 0.19 4.09 8.06 -2.91 -0.02 4.07 15 23 H 0.33 15.20 8.40 -89.70 -0.75 14.45 15 24 H 0.32 13.35 9.06 -89.69 -0.81 12.53 15 25 H 0.28 17.19 6.39 -92.70 -0.59 16.60 15 Total: -1.00 -64.61 230.99 1.96 -62.65 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -0.18 Total: 25.70 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 2.43 Total: -46.10 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -1.07 Total: -96.71 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.28 Total: 1.04 kcal Total: -64.61 1.96 -62.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331061.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.287 kcal (2) G-P(sol) polarization free energy of solvation -64.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds