Wall clock time and date at job start Mon Mar 30 2020 02:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47617 * 2 1 4 4 C 1.50703 * 109.47177 * 239.99951 * 2 1 3 5 5 H 1.08008 * 119.99697 * 335.25814 * 4 2 1 6 6 C 1.37870 * 120.00182 * 155.25686 * 4 2 1 7 7 N 1.31514 * 120.00382 * 355.43348 * 6 4 2 8 8 Si 1.86801 * 119.99983 * 175.15542 * 6 4 2 9 9 H 1.48496 * 109.47428 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46862 * 120.00377 * 8 6 4 11 11 H 1.48502 * 109.47445 * 239.99802 * 8 6 4 12 12 N 1.46507 * 109.47249 * 120.00222 * 2 1 3 13 13 C 1.40781 * 119.99838 * 274.99875 * 12 2 1 14 14 C 1.38761 * 122.61114 * 179.97438 * 13 12 2 15 15 C 1.33428 * 114.88173 * 180.02562 * 14 13 12 16 16 S 1.75860 * 109.68832 * 359.97438 * 15 14 13 17 17 C 1.33757 * 122.60827 * 359.71150 * 13 12 2 18 18 H 1.08997 * 109.47216 * 175.03001 * 1 2 3 19 19 H 1.09002 * 109.47227 * 295.02625 * 1 2 3 20 20 H 1.09000 * 109.47303 * 55.02689 * 1 2 3 21 21 H 0.97008 * 119.99269 * 4.85365 * 7 6 4 22 22 H 0.97000 * 119.99921 * 94.99701 * 12 2 1 23 23 H 1.08003 * 122.55952 * 359.97438 * 14 13 12 24 24 H 1.07998 * 125.15416 * 179.97438 * 15 14 13 25 25 H 1.07999 * 125.19813 * 359.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4114 -1.4456 -1.7209 6 6 3.2845 -0.4219 -1.7302 7 7 4.0043 0.5359 -1.1879 8 14 3.9618 -1.3966 -3.1726 9 1 2.9660 -2.4146 -3.5935 10 1 4.2379 -0.4769 -4.3054 11 1 5.2200 -2.0727 -2.7661 12 7 2.0183 -0.6907 1.1962 13 6 2.1528 0.0116 2.4089 14 6 2.6092 -0.5883 3.5739 15 6 2.6759 0.2205 4.6330 16 16 2.1443 1.8345 4.1802 17 6 1.8555 1.3104 2.5265 18 1 -0.3633 -1.0238 -0.0890 19 1 -0.3634 0.4347 0.9312 20 1 -0.3634 0.5890 -0.8421 21 1 3.6851 0.9918 -0.3933 22 1 2.2490 -1.6318 1.1526 23 1 2.8883 -1.6306 3.6201 24 1 3.0063 -0.0718 5.6187 25 1 1.4918 1.9405 1.7283 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085534824.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:47 Heat of formation + Delta-G solvation = 6.428683 kcal Electronic energy + Delta-G solvation = -10387.867025 eV Core-core repulsion = 8491.883080 eV Total energy + Delta-G solvation = -1895.983945 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.56219 -36.65965 -33.83225 -30.96126 -29.19083 -26.68590 -24.58938 -22.36062 -20.01724 -19.41010 -18.36040 -16.70147 -15.80701 -15.69548 -15.40162 -14.49179 -14.45005 -13.71542 -13.50787 -13.17232 -12.83385 -12.77399 -12.61449 -12.04414 -11.90685 -11.71240 -10.92549 -10.53619 -10.43953 -9.48963 -8.69693 -7.93809 -6.49834 0.30863 0.98380 1.27240 1.53472 1.60646 1.78118 2.15692 2.52277 2.86922 3.46385 4.16684 4.47515 4.49405 4.71981 4.76039 4.81402 5.04094 5.11316 5.33243 5.35165 5.49746 5.87219 6.13478 6.48993 6.82602 7.28110 7.39335 8.67685 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.055246 B = 0.009789 C = 0.009330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.698455 B = 2859.804922 C = 3000.342286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.250 3.750 3 H 0.008 0.992 4 C -0.616 4.616 5 H 0.053 0.947 6 C -0.017 4.017 7 N -0.922 5.922 8 Si 1.122 2.878 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.728 5.728 13 C 0.181 3.819 14 C -0.184 4.184 15 C -0.171 4.171 16 S 0.091 5.909 17 C -0.363 4.363 18 H 0.046 0.954 19 H 0.038 0.962 20 H 0.049 0.951 21 H 0.261 0.739 22 H 0.386 0.614 23 H 0.151 0.849 24 H 0.200 0.800 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -1.847 8.802 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.148 3.852 3 H 0.026 0.974 4 C -0.655 4.655 5 H 0.071 0.929 6 C -0.219 4.219 7 N -0.557 5.557 8 Si 0.944 3.056 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.357 5.357 13 C 0.068 3.932 14 C -0.219 4.219 15 C -0.307 4.307 16 S 0.348 5.652 17 C -0.506 4.506 18 H 0.065 0.935 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.220 0.780 23 H 0.169 0.831 24 H 0.217 0.783 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.644 -0.478 8.367 8.540 hybrid contribution -1.072 -1.257 0.076 1.654 sum -2.716 -1.735 8.443 9.037 Atomic orbital electron populations 1.21965 0.97367 1.00526 0.99447 1.18529 0.90789 0.92449 0.83481 0.97375 1.22447 1.03864 1.26904 1.12240 0.92900 1.27367 0.94466 0.95856 1.04169 1.70828 1.41687 1.21506 1.21694 0.82867 0.75599 0.74757 0.72368 1.19367 1.20648 1.20746 1.46061 1.72040 1.11504 1.06139 1.17527 0.95603 0.91648 0.88429 1.20060 1.07695 1.02465 0.91650 1.25789 1.05744 0.95750 1.03426 1.83433 1.67348 1.11863 1.02523 1.24356 1.26196 0.98730 1.01289 0.93507 0.94245 0.93207 0.92830 0.78046 0.83138 0.78300 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 9.48 71.98 0.68 -5.17 15 2 C 0.25 12.59 2.12 44.24 0.09 12.69 15 3 H 0.01 0.47 5.32 -2.39 -0.01 0.46 15 4 C -0.62 -33.48 8.50 25.60 0.22 -33.26 15 5 H 0.05 2.83 7.81 -2.91 -0.02 2.81 15 6 C -0.02 -0.93 5.46 84.65 0.46 -0.47 15 7 N -0.92 -55.65 13.63 21.44 0.29 -55.36 15 8 Si 1.12 48.84 29.91 68.60 2.05 50.89 15 9 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 12 N -0.73 -33.36 5.30 -325.79 -1.73 -35.09 15 13 C 0.18 7.55 6.61 36.81 0.24 7.79 15 14 C -0.18 -6.21 10.14 21.31 0.22 -5.99 15 15 C -0.17 -4.81 11.22 66.73 0.75 -4.06 15 16 S 0.09 2.84 23.33 -56.49 -1.32 1.52 15 17 C -0.36 -14.97 10.12 66.80 0.68 -14.30 15 18 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 19 H 0.04 1.61 8.01 -2.39 -0.02 1.59 15 20 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 21 H 0.26 16.27 6.66 -92.70 -0.62 15.66 15 22 H 0.39 17.13 8.68 -92.71 -0.80 16.33 15 23 H 0.15 4.41 8.06 -2.91 -0.02 4.39 15 24 H 0.20 3.82 8.06 -2.91 -0.02 3.80 15 25 H 0.13 5.81 6.89 -2.91 -0.02 5.79 15 Total: -1.00 -61.71 232.90 3.18 -58.54 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.54 Total: 22.27 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.34 Total: -42.77 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -1.44 Total: -90.45 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.05 Total: 50.89 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.32 Total: 1.52 kcal Total: -61.71 3.18 -58.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085534824.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.964 kcal (2) G-P(sol) polarization free energy of solvation -61.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds