Wall clock time and date at job start Mon Mar 30 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09002 * 110.53783 * 2 1 4 4 C 1.51311 * 110.60455 * 236.98343 * 2 1 3 5 5 O 1.21228 * 125.39958 * 61.45887 * 4 2 1 6 6 N 1.33875 * 109.20592 * 241.48240 * 4 2 1 7 7 C 1.37495 * 122.76352 * 180.02562 * 6 4 2 8 8 H 1.08004 * 120.00001 * 213.68617 * 7 6 4 9 9 C 1.38913 * 120.00072 * 33.67748 * 7 6 4 10 10 N 1.31361 * 120.00766 * 214.41899 * 9 7 6 11 11 Si 1.86811 * 119.99948 * 34.42064 * 9 7 6 12 12 H 1.48495 * 109.46739 * 91.52765 * 11 9 7 13 13 H 1.48496 * 109.47145 * 211.53261 * 11 9 7 14 14 H 1.48501 * 109.46621 * 331.53049 * 11 9 7 15 15 C 1.33882 * 114.47537 * 0.02562 * 6 4 2 16 16 O 1.21218 * 125.39235 * 180.02562 * 15 6 4 17 17 C 1.51313 * 109.20342 * 0.02562 * 15 6 4 18 18 H 1.09002 * 110.60615 * 118.51900 * 17 15 6 19 19 C 1.52999 * 110.73424 * 241.41403 * 17 15 6 20 20 H 1.08999 * 109.46913 * 297.15402 * 1 2 3 21 21 H 1.08994 * 109.46961 * 177.14873 * 1 2 3 22 22 H 1.09000 * 109.47006 * 57.14908 * 1 2 3 23 23 H 0.96997 * 120.00447 * 180.02562 * 10 9 7 24 24 H 1.09005 * 109.46679 * 174.21685 * 19 17 15 25 25 H 1.08996 * 109.47411 * 294.21336 * 19 17 15 26 26 H 1.08995 * 109.47045 * 54.22034 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0626 -0.7717 -1.1876 5 8 1.8678 -0.4925 -2.3511 6 7 2.7826 -1.8121 -0.7499 7 6 3.3974 -2.7015 -1.5992 8 1 3.4860 -3.7412 -1.3206 9 6 3.9045 -2.2628 -2.8159 10 7 3.8656 -3.0507 -3.8662 11 14 4.6418 -0.5523 -2.9583 12 1 6.1014 -0.6189 -2.6934 13 1 4.4106 -0.0261 -4.3276 14 1 3.9993 0.3477 -1.9671 15 6 2.8546 -1.9152 0.5830 16 8 3.4524 -2.7781 1.1891 17 6 2.0715 -0.7839 1.2128 18 1 1.2515 -1.1740 1.8157 19 6 2.9866 0.1023 2.0602 20 1 -0.3633 0.4690 0.9144 21 1 -0.3633 -1.0263 -0.0511 22 1 -0.3633 0.5575 -0.8633 23 1 4.2200 -2.7445 -4.7156 24 1 2.4257 0.9652 2.4194 25 1 3.3591 -0.4685 2.9108 26 1 3.8266 0.4415 1.4543 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086016828.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:37 Heat of formation + Delta-G solvation = -62.241135 kcal Electronic energy + Delta-G solvation = -13039.785514 eV Core-core repulsion = 10698.070952 eV Total energy + Delta-G solvation = -2341.714563 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.09297 -37.45161 -35.15829 -34.38134 -32.13974 -30.05454 -26.54645 -23.85257 -23.37544 -20.66364 -19.29983 -17.50735 -16.32975 -15.32391 -15.10297 -14.51967 -13.78961 -13.66783 -13.55349 -13.00378 -12.76682 -12.60988 -12.09158 -12.01845 -11.52167 -11.14201 -10.93628 -10.81442 -10.67927 -10.10561 -9.34082 -9.25563 -8.76284 -8.30856 -6.58717 -4.22419 2.41095 3.16847 3.30361 3.31572 3.85621 3.98753 4.28323 4.58853 4.82265 5.01345 5.10193 5.26370 5.48926 5.61440 5.65758 5.89344 5.95723 6.05668 6.15596 6.26786 6.39590 7.27152 7.65818 8.12617 8.49115 8.58376 9.09656 9.42498 10.48217 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.017418 C = 0.015351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.918799 B = 1607.171674 C = 1823.577538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 H 0.108 0.892 4 C 0.494 3.506 5 O -0.496 6.496 6 N -0.412 5.412 7 C -0.394 4.394 8 H 0.112 0.888 9 C 0.104 3.896 10 N -0.820 5.820 11 Si 0.898 3.102 12 H -0.287 1.287 13 H -0.278 1.278 14 H -0.272 1.272 15 C 0.494 3.506 16 O -0.506 6.506 17 C -0.129 4.129 18 H 0.110 0.890 19 C -0.131 4.131 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.279 0.721 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 8.214 8.162 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 H 0.126 0.874 4 C 0.285 3.715 5 O -0.372 6.372 6 N -0.141 5.141 7 C -0.517 4.517 8 H 0.130 0.870 9 C -0.110 4.110 10 N -0.450 5.450 11 Si 0.725 3.275 12 H -0.214 1.214 13 H -0.203 1.203 14 H -0.197 1.197 15 C 0.284 3.716 16 O -0.383 6.383 17 C -0.150 4.150 18 H 0.128 0.872 19 C -0.189 4.189 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.104 7.799 7.611 11.645 hybrid contribution 0.455 0.739 -0.289 0.915 sum -3.649 8.538 7.322 11.825 Atomic orbital electron populations 1.21603 0.91884 1.02811 1.02459 1.22136 0.98514 1.00851 0.93556 0.87353 1.20422 0.78309 0.82915 0.89876 1.90507 1.58225 1.69222 1.19267 1.42478 1.39834 1.24496 1.07287 1.18941 1.42486 0.91863 0.98379 0.87020 1.25100 0.93630 0.98519 0.93708 1.69901 1.36269 1.39158 0.99697 0.86512 0.77717 0.84589 0.78726 1.21405 1.20347 1.19747 1.20599 0.81554 0.86333 0.83114 1.90585 1.43294 1.37513 1.66864 1.22110 0.99855 0.95949 0.97121 0.87184 1.21610 0.98930 0.98762 0.99583 0.91579 0.92098 0.91431 0.91044 0.91527 0.91354 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.09 37.16 0.34 -1.42 15 2 C -0.13 -2.16 3.33 -90.83 -0.30 -2.47 15 3 H 0.11 1.61 7.74 -51.93 -0.40 1.21 15 4 C 0.49 11.60 5.26 -11.09 -0.06 11.55 15 5 O -0.50 -13.09 14.01 5.60 0.08 -13.01 15 6 N -0.41 -10.54 2.35 -60.62 -0.14 -10.68 15 7 C -0.39 -11.56 9.65 -14.76 -0.14 -11.70 15 8 H 0.11 3.50 8.06 -52.48 -0.42 3.08 15 9 C 0.10 3.05 4.71 -17.50 -0.08 2.97 15 10 N -0.82 -24.35 13.95 55.49 0.77 -23.58 15 11 Si 0.90 23.14 25.98 -169.99 -4.42 18.73 15 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 15 13 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 14 H -0.27 -6.83 5.68 56.52 0.32 -6.51 15 15 C 0.49 11.20 7.36 -11.08 -0.08 11.12 15 16 O -0.51 -12.80 17.64 5.61 0.10 -12.70 15 17 C -0.13 -2.10 3.33 -90.83 -0.30 -2.40 15 18 H 0.11 1.51 7.74 -51.93 -0.40 1.10 15 19 C -0.13 -1.76 9.10 37.16 0.34 -1.42 15 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 23 H 0.28 7.64 8.31 -40.82 -0.34 7.30 15 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 LS Contribution 226.34 15.07 3.41 3.41 Total: -1.00 -33.07 226.34 -3.47 -36.54 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -2.98 Total: -4.93 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.29 Total: 6.23 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.63 Total: -34.26 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.18 Total: -25.71 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.42 Total: 18.73 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -33.07 -3.47 -36.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086016828.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.705 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds