Wall clock time and date at job start Mon Mar 30 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09002 * 110.53783 * 2 1 4 4 C 1.51311 * 110.60455 * 236.98343 * 2 1 3 5 5 O 1.21228 * 125.39958 * 61.45887 * 4 2 1 6 6 N 1.33875 * 109.20592 * 241.48240 * 4 2 1 7 7 C 1.37495 * 122.76352 * 180.02562 * 6 4 2 8 8 H 1.08004 * 120.00001 * 213.68617 * 7 6 4 9 9 C 1.38913 * 120.00072 * 33.67748 * 7 6 4 10 10 N 1.31361 * 120.00766 * 214.41899 * 9 7 6 11 11 Si 1.86811 * 119.99948 * 34.42064 * 9 7 6 12 12 H 1.48495 * 109.46739 * 91.52765 * 11 9 7 13 13 H 1.48496 * 109.47145 * 211.53261 * 11 9 7 14 14 H 1.48501 * 109.46621 * 331.53049 * 11 9 7 15 15 C 1.33882 * 114.47537 * 0.02562 * 6 4 2 16 16 O 1.21218 * 125.39235 * 180.02562 * 15 6 4 17 17 C 1.51313 * 109.20342 * 0.02562 * 15 6 4 18 18 H 1.09002 * 110.60615 * 118.51900 * 17 15 6 19 19 C 1.52999 * 110.73424 * 241.41403 * 17 15 6 20 20 H 1.08999 * 109.46913 * 297.15402 * 1 2 3 21 21 H 1.08994 * 109.46961 * 177.14873 * 1 2 3 22 22 H 1.09000 * 109.47006 * 57.14908 * 1 2 3 23 23 H 0.96997 * 120.00447 * 180.02562 * 10 9 7 24 24 H 1.09005 * 109.46679 * 174.21685 * 19 17 15 25 25 H 1.08996 * 109.47411 * 294.21336 * 19 17 15 26 26 H 1.08995 * 109.47045 * 54.22034 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0626 -0.7717 -1.1876 5 8 1.8678 -0.4925 -2.3511 6 7 2.7826 -1.8121 -0.7499 7 6 3.3974 -2.7015 -1.5992 8 1 3.4860 -3.7412 -1.3206 9 6 3.9045 -2.2628 -2.8159 10 7 3.8656 -3.0507 -3.8662 11 14 4.6418 -0.5523 -2.9583 12 1 6.1014 -0.6189 -2.6934 13 1 4.4106 -0.0261 -4.3276 14 1 3.9993 0.3477 -1.9671 15 6 2.8546 -1.9152 0.5830 16 8 3.4524 -2.7781 1.1891 17 6 2.0715 -0.7839 1.2128 18 1 1.2515 -1.1740 1.8157 19 6 2.9866 0.1023 2.0602 20 1 -0.3633 0.4690 0.9144 21 1 -0.3633 -1.0263 -0.0511 22 1 -0.3633 0.5575 -0.8633 23 1 4.2200 -2.7445 -4.7156 24 1 2.4257 0.9652 2.4194 25 1 3.3591 -0.4685 2.9108 26 1 3.8266 0.4415 1.4543 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086016828.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:37 Heat of formation + Delta-G solvation = -86.762567 kcal Electronic energy + Delta-G solvation = -13040.848844 eV Core-core repulsion = 10698.070952 eV Total energy + Delta-G solvation = -2342.777892 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.83889 -39.33337 -36.82156 -36.24783 -34.20339 -31.20227 -28.37394 -25.49366 -24.91176 -22.22793 -21.09366 -19.46194 -18.17905 -17.12957 -16.89652 -16.37482 -15.46254 -15.28746 -15.22320 -14.77290 -14.42962 -14.25550 -13.41367 -13.20510 -13.06165 -12.81666 -12.63210 -12.20311 -12.12673 -11.96350 -11.32107 -11.02430 -10.62076 -10.43931 -8.80376 -6.48248 0.62945 1.16341 1.18506 1.26984 1.98294 2.15171 2.30680 2.79142 3.26766 3.48266 3.62815 3.98487 4.35356 4.44772 4.51331 4.94477 4.95673 4.99676 5.04630 5.19690 5.29646 5.34490 5.53447 6.12041 6.36623 6.72010 6.96619 7.44800 8.31730 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.017418 C = 0.015351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.918799 B = 1607.171674 C = 1823.577538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 H 0.142 0.858 4 C 0.482 3.518 5 O -0.534 6.534 6 N -0.437 5.437 7 C -0.417 4.417 8 H 0.067 0.933 9 C 0.062 3.938 10 N -0.861 5.861 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.275 1.275 14 H -0.260 1.260 15 C 0.485 3.515 16 O -0.544 6.544 17 C -0.109 4.109 18 H 0.148 0.852 19 C -0.130 4.130 20 H 0.116 0.884 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.286 0.714 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 11.313 10.268 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 H 0.159 0.841 4 C 0.276 3.724 5 O -0.412 6.412 6 N -0.167 5.167 7 C -0.541 4.541 8 H 0.085 0.915 9 C -0.149 4.149 10 N -0.493 5.493 11 Si 0.774 3.226 12 H -0.201 1.201 13 H -0.200 1.200 14 H -0.184 1.184 15 C 0.278 3.722 16 O -0.422 6.422 17 C -0.130 4.130 18 H 0.166 0.834 19 C -0.187 4.187 20 H 0.134 0.866 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.133 0.867 25 H 0.089 0.911 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.199 10.906 9.742 15.521 hybrid contribution 0.741 -0.332 -0.905 1.215 sum -4.458 10.574 8.838 14.484 Atomic orbital electron populations 1.21693 0.88964 1.02753 1.05039 1.22311 1.00621 1.01040 0.89465 0.84076 1.21722 0.77016 0.82303 0.91390 1.90471 1.59183 1.70103 1.21480 1.42822 1.40703 1.24951 1.08223 1.18704 1.44107 0.91366 0.99901 0.91461 1.25845 0.93594 1.02237 0.93200 1.69947 1.37780 1.41210 1.00410 0.85683 0.77526 0.80317 0.79055 1.20100 1.20009 1.18406 1.21838 0.80942 0.87128 0.82272 1.90554 1.44903 1.39428 1.67337 1.22264 1.00257 0.93262 0.97254 0.83433 1.21715 0.98518 0.99734 0.98746 0.86572 0.93287 0.91573 0.90388 0.86666 0.91111 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.09 71.99 0.65 -2.14 15 2 C -0.11 -3.29 3.33 -10.93 -0.04 -3.33 15 3 H 0.14 3.31 7.74 -2.39 -0.02 3.29 15 4 C 0.48 22.00 5.26 87.99 0.46 22.47 15 5 O -0.53 -27.88 14.01 -2.87 -0.04 -27.92 15 6 N -0.44 -22.49 2.35 -583.52 -1.37 -23.87 15 7 C -0.42 -25.60 9.65 83.97 0.81 -24.79 15 8 H 0.07 4.57 8.06 -2.91 -0.02 4.55 15 9 C 0.06 3.73 4.71 84.92 0.40 4.13 15 10 N -0.86 -53.29 13.95 21.65 0.30 -52.99 15 11 Si 0.95 47.92 25.98 68.60 1.78 49.70 15 12 H -0.27 -13.09 7.11 99.48 0.71 -12.38 15 13 H -0.27 -13.59 7.11 99.48 0.71 -12.88 15 14 H -0.26 -12.39 5.68 99.48 0.56 -11.82 15 15 C 0.49 21.65 7.36 87.99 0.65 22.30 15 16 O -0.54 -27.85 17.64 -2.84 -0.05 -27.90 15 17 C -0.11 -3.08 3.33 -10.93 -0.04 -3.12 15 18 H 0.15 3.17 7.74 -2.39 -0.02 3.15 15 19 C -0.13 -2.79 9.10 71.98 0.65 -2.13 15 20 H 0.12 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 15 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.29 16.20 8.31 -92.71 -0.77 15.43 15 24 H 0.11 1.45 8.14 -2.38 -0.02 1.43 15 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 15 Total: -1.00 -77.30 226.34 5.21 -72.09 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: 1.03 Total: -2.51 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 3.56 Total: 13.38 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.07 Total: -76.85 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.09 Total: -55.81 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.78 Total: 49.70 kcal Total: -77.30 5.21 -72.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086016828.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.676 kcal (2) G-P(sol) polarization free energy of solvation -77.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds