Wall clock time and date at job start Mon Mar 30 2020 02:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 N 1.46497 * 109.47064 * 89.97826 * 7 6 2 9 9 C 1.36936 * 119.99583 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00570 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99977 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99871 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00321 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47296 * 89.99685 * 13 11 9 15 15 H 1.48497 * 109.46953 * 209.99733 * 13 11 9 16 16 H 1.48500 * 109.46606 * 329.99768 * 13 11 9 17 17 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 18 18 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 19 19 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 20 20 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 21 21 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 22 22 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 23 23 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 24 24 H 0.96998 * 120.00123 * 359.97438 * 8 7 6 25 25 H 0.96998 * 120.00168 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 7 1.4696 -2.9708 -1.3817 9 6 0.9594 -4.2165 -1.6325 10 1 0.6931 -4.8663 -0.8121 11 6 0.7854 -4.6446 -2.9415 12 7 1.1104 -3.8530 -3.9415 13 14 0.0901 -6.3443 -3.2838 14 1 -1.3899 -6.2644 -3.3757 15 1 0.6388 -6.8546 -4.5658 16 1 0.4687 -7.2650 -2.1819 17 1 -0.3633 0.0005 1.0276 18 1 -0.3633 0.8898 -0.5142 19 1 -0.3633 -0.8902 -0.5134 20 1 1.7965 2.1464 -0.0007 21 1 4.3078 1.7822 0.0010 22 1 2.3395 -3.1927 0.5138 23 1 0.6922 -2.5185 0.5130 24 1 1.7084 -2.3870 -2.1187 25 1 0.9885 -4.1519 -4.8562 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087309859.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:40 Heat of formation + Delta-G solvation = 36.663440 kcal Electronic energy + Delta-G solvation = -10148.781832 eV Core-core repulsion = 8254.108965 eV Total energy + Delta-G solvation = -1894.672868 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.08249 -34.56330 -31.68024 -30.00590 -27.78518 -24.63709 -22.77161 -21.69867 -17.97183 -17.37039 -16.41506 -14.90152 -14.59825 -13.70384 -13.40921 -13.23051 -12.93032 -12.24730 -11.79229 -11.63982 -11.33594 -11.14165 -10.85044 -10.80337 -10.29010 -10.08322 -9.77373 -8.89245 -8.22182 -7.91228 -6.93941 -5.75690 -3.05834 1.39972 2.06679 2.44616 3.07375 3.44377 3.49364 3.51314 4.61300 5.23657 5.38462 5.55677 5.73890 5.79255 5.98357 6.01678 6.15739 6.31314 6.38010 6.53259 6.58028 6.90623 7.02865 7.69208 8.41495 9.53453 10.08805 10.45645 11.46752 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.057317 B = 0.009020 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.393420 B = 3103.360553 C = 3275.533793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.110 4.110 3 C -0.127 4.127 4 C -0.230 4.230 5 S 0.094 5.906 6 C -0.159 4.159 7 C 0.218 3.782 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.072 0.928 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.909 3.091 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.281 1.281 17 H 0.061 0.939 18 H 0.059 0.941 19 H 0.079 0.921 20 H 0.133 0.867 21 H 0.157 0.843 22 H 0.028 0.972 23 H 0.040 0.960 24 H 0.387 0.613 25 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 8.679 8.333 12.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.159 4.159 4 C -0.366 4.366 5 S 0.359 5.641 6 C -0.277 4.277 7 C 0.089 3.911 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.090 0.910 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.740 3.260 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.207 1.207 17 H 0.080 0.920 18 H 0.078 0.922 19 H 0.098 0.902 20 H 0.151 0.849 21 H 0.175 0.825 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.220 0.780 25 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.746 7.655 8.354 11.934 hybrid contribution -1.450 0.220 -0.583 1.578 sum 2.296 7.874 7.772 11.299 Atomic orbital electron populations 1.20502 0.89892 1.03265 1.01550 1.18848 0.97532 0.91451 1.04450 1.20004 0.92913 0.98992 1.03957 1.25470 0.99603 0.99303 1.12216 1.84232 1.07312 0.99675 1.72910 1.24730 0.94878 1.00156 1.07929 1.19171 0.96661 0.85645 0.89626 1.42366 1.77401 1.16931 1.00298 1.19234 1.34574 0.91706 0.91878 0.91022 1.24757 1.02059 0.98438 0.95507 1.69680 1.53742 1.36238 0.98222 0.86166 0.78640 0.83875 0.77350 1.21666 1.21750 1.20708 0.91992 0.92174 0.90243 0.84928 0.82510 0.95446 0.94221 0.77952 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.60 36.01 0.35 -1.10 15 2 C -0.11 -1.89 5.80 -106.25 -0.62 -2.51 15 3 C -0.13 -1.90 9.98 -41.21 -0.41 -2.31 15 4 C -0.23 -3.32 11.23 29.04 0.33 -2.99 15 5 S 0.09 1.56 23.33 -107.50 -2.51 -0.95 15 6 C -0.16 -3.00 5.87 -36.00 -0.21 -3.22 15 7 C 0.22 4.65 6.12 -5.19 -0.03 4.62 15 8 N -0.72 -18.95 5.59 -61.09 -0.34 -19.30 15 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 15 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 15 11 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 15 12 N -0.93 -28.57 13.06 55.49 0.72 -27.84 15 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 15 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 17 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 18 H 0.06 0.82 8.13 -51.93 -0.42 0.40 15 19 H 0.08 1.43 7.25 -51.93 -0.38 1.06 15 20 H 0.13 1.62 8.06 -52.49 -0.42 1.20 15 21 H 0.16 1.78 8.06 -52.49 -0.42 1.36 15 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 23 H 0.04 0.83 7.32 -51.93 -0.38 0.45 15 24 H 0.39 10.84 7.66 -40.82 -0.31 10.52 15 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 LS Contribution 235.83 15.07 3.55 3.55 Total: -1.00 -30.44 235.83 -7.17 -37.61 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.73 Total: 4.38 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -0.85 Total: -14.95 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.38 Total: -47.14 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.51 Total: -0.95 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.44 -7.17 -37.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087309859.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.272 kcal (2) G-P(sol) polarization free energy of solvation -30.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds