Wall clock time and date at job start Mon Mar 30 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 C 1.50704 * 125.20741 * 0.06509 * 6 2 1 8 8 N 1.46497 * 109.47064 * 89.97826 * 7 6 2 9 9 C 1.36936 * 119.99583 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00570 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99977 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99871 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00321 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47296 * 89.99685 * 13 11 9 15 15 H 1.48497 * 109.46953 * 209.99733 * 13 11 9 16 16 H 1.48500 * 109.46606 * 329.99768 * 13 11 9 17 17 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 18 18 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 19 19 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 20 20 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 21 21 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 22 22 H 1.09001 * 109.46886 * 209.98166 * 7 6 2 23 23 H 1.08999 * 109.46454 * 329.97614 * 7 6 2 24 24 H 0.96998 * 120.00123 * 359.97438 * 8 7 6 25 25 H 0.96998 * 120.00168 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 6 1.6537 -2.5192 -0.0003 8 7 1.4696 -2.9708 -1.3817 9 6 0.9594 -4.2165 -1.6325 10 1 0.6931 -4.8663 -0.8121 11 6 0.7854 -4.6446 -2.9415 12 7 1.1104 -3.8530 -3.9415 13 14 0.0901 -6.3443 -3.2838 14 1 -1.3899 -6.2644 -3.3757 15 1 0.6388 -6.8546 -4.5658 16 1 0.4687 -7.2650 -2.1819 17 1 -0.3633 0.0005 1.0276 18 1 -0.3633 0.8898 -0.5142 19 1 -0.3633 -0.8902 -0.5134 20 1 1.7965 2.1464 -0.0007 21 1 4.3078 1.7822 0.0010 22 1 2.3395 -3.1927 0.5138 23 1 0.6922 -2.5185 0.5130 24 1 1.7084 -2.3870 -2.1187 25 1 0.9885 -4.1519 -4.8562 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087309859.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:39 Heat of formation + Delta-G solvation = 17.438137 kcal Electronic energy + Delta-G solvation = -10149.615504 eV Core-core repulsion = 8254.108965 eV Total energy + Delta-G solvation = -1895.506539 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.39042 -36.47171 -33.56456 -31.49576 -29.38448 -26.37958 -24.48472 -23.13105 -19.60096 -19.00885 -17.94986 -16.66988 -16.10795 -15.38710 -15.11179 -14.85992 -14.47873 -13.57616 -13.39133 -13.03079 -12.85113 -12.76830 -12.57051 -12.42781 -12.09517 -11.87784 -11.56581 -10.98486 -9.52647 -9.20334 -9.05113 -7.96113 -5.27220 0.12065 0.79348 1.19194 1.47481 1.49822 1.58367 1.83484 2.56448 3.37179 3.98939 4.12956 4.17468 4.40413 4.63147 4.72117 4.82816 4.85313 4.87388 5.17728 5.22277 5.46335 5.64102 5.71287 6.23505 7.30629 8.01235 8.28686 9.27283 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.057317 B = 0.009020 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.393420 B = 3103.360553 C = 3275.533793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.104 4.104 3 C -0.138 4.138 4 C -0.206 4.206 5 S 0.075 5.925 6 C -0.203 4.203 7 C 0.222 3.778 8 N -0.736 5.736 9 C -0.250 4.250 10 H 0.079 0.921 11 C -0.072 4.072 12 N -0.969 5.969 13 Si 0.978 3.022 14 H -0.284 1.284 15 H -0.295 1.295 16 H -0.268 1.268 17 H 0.083 0.917 18 H 0.081 0.919 19 H 0.046 0.954 20 H 0.167 0.833 21 H 0.194 0.806 22 H 0.024 0.976 23 H 0.044 0.956 24 H 0.373 0.627 25 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 9.739 9.147 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.168 4.168 4 C -0.342 4.342 5 S 0.339 5.661 6 C -0.320 4.320 7 C 0.095 3.905 8 N -0.379 5.379 9 C -0.382 4.382 10 H 0.097 0.903 11 C -0.265 4.265 12 N -0.620 5.620 13 Si 0.807 3.193 14 H -0.211 1.211 15 H -0.221 1.221 16 H -0.193 1.193 17 H 0.101 0.899 18 H 0.100 0.900 19 H 0.065 0.935 20 H 0.184 0.816 21 H 0.212 0.788 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.205 0.795 25 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.674 8.712 9.219 13.205 hybrid contribution -1.401 0.001 -0.760 1.594 sum 2.273 8.713 8.459 12.355 Atomic orbital electron populations 1.20519 0.89158 1.02653 1.02735 1.19239 0.98361 0.91831 1.02273 1.20293 0.92979 0.99545 1.04028 1.25927 1.00313 0.98316 1.09608 1.84235 1.06189 1.02247 1.73381 1.24499 0.96347 0.99267 1.11920 1.19112 0.96835 0.87497 0.87067 1.42537 1.77210 1.16235 1.01903 1.19663 1.33609 0.92641 0.92253 0.90330 1.25618 1.03111 1.02409 0.95346 1.69845 1.55558 1.38212 0.98348 0.85074 0.77810 0.79380 0.77065 1.21130 1.22145 1.19323 0.89861 0.90048 0.93473 0.81564 0.78847 0.95819 0.93858 0.79503 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 9.60 71.24 0.68 -2.03 15 2 C -0.10 -3.38 5.80 -20.92 -0.12 -3.50 15 3 C -0.14 -3.67 9.98 21.22 0.21 -3.46 15 4 C -0.21 -5.26 11.23 66.72 0.75 -4.51 15 5 S 0.07 2.41 23.33 -56.49 -1.32 1.10 15 6 C -0.20 -7.60 5.87 24.59 0.14 -7.46 15 7 C 0.22 9.66 6.12 85.63 0.52 10.18 15 8 N -0.74 -39.29 5.59 -347.18 -1.94 -41.24 15 9 C -0.25 -14.32 9.99 84.03 0.84 -13.48 15 10 H 0.08 4.28 7.83 -2.91 -0.02 4.26 15 11 C -0.07 -4.24 5.50 84.86 0.47 -3.77 15 12 N -0.97 -60.61 13.06 21.65 0.28 -60.33 15 13 Si 0.98 46.60 29.55 68.60 2.03 48.63 15 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 15 H -0.29 -14.12 7.11 99.48 0.71 -13.41 15 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 17 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 18 H 0.08 2.03 8.13 -2.39 -0.02 2.01 15 19 H 0.05 1.70 7.25 -2.39 -0.02 1.68 15 20 H 0.17 3.28 8.06 -2.91 -0.02 3.26 15 21 H 0.19 3.46 8.06 -2.91 -0.02 3.44 15 22 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.04 1.83 7.32 -2.39 -0.02 1.81 15 24 H 0.37 21.55 7.66 -92.71 -0.71 20.84 15 25 H 0.25 15.20 8.31 -92.71 -0.77 14.43 15 Total: -1.00 -65.36 235.83 3.02 -62.33 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.48 Total: 17.53 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.50 Total: -28.02 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -1.66 Total: -101.57 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.32 Total: 1.10 kcal Total: -65.36 3.02 -62.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087309859.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.771 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds