Wall clock time and date at job start Mon Mar 30 2020 02:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33393 * 122.53658 * 2 1 4 4 S 1.75889 * 109.59109 * 179.97438 * 3 2 1 5 5 C 1.75883 * 90.97061 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20428 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47275 * 160.02954 * 6 5 4 8 8 N 1.46898 * 109.46797 * 40.02470 * 6 5 4 9 9 C 1.50700 * 109.47148 * 280.02731 * 6 5 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00083 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48494 * 109.47228 * 179.97438 * 13 11 9 15 15 H 1.48501 * 109.46793 * 300.00001 * 13 11 9 16 16 H 1.48500 * 109.47000 * 60.00094 * 13 11 9 17 17 C 1.33389 * 109.59386 * 0.23387 * 5 4 3 18 18 H 1.09005 * 109.46764 * 89.97749 * 1 2 3 19 19 H 1.08989 * 109.47067 * 209.97692 * 1 2 3 20 20 H 1.08997 * 109.47158 * 329.98233 * 1 2 3 21 21 H 1.07998 * 125.20901 * 359.97199 * 3 2 1 22 22 H 1.00892 * 111.00332 * 300.00256 * 8 6 5 23 23 H 1.00905 * 110.99665 * 63.96030 * 8 6 5 24 24 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 25 25 H 1.07999 * 122.54078 * 179.75249 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2245 1.1246 0.0000 4 16 3.9387 0.7305 0.0007 5 6 3.5737 -0.9900 0.0018 6 6 4.5981 -2.0954 0.0023 7 1 4.1367 -3.0182 0.3539 8 7 5.7089 -1.7331 0.8926 9 6 5.1208 -2.2965 -1.3968 10 1 4.7487 -1.6848 -2.2054 11 6 6.0746 -3.2607 -1.6444 12 7 6.5280 -4.0053 -0.6597 13 14 6.7231 -3.5096 -3.3785 14 1 7.7332 -4.5980 -3.3778 15 1 5.6004 -3.8760 -4.2789 16 1 7.3514 -2.2521 -3.8572 17 6 2.2516 -1.1669 -0.0036 18 1 -0.3633 0.0004 -1.0277 19 1 -0.3633 -0.8901 0.5134 20 1 -0.3633 0.8898 0.5141 21 1 1.8155 2.1241 -0.0004 22 1 6.1534 -0.8802 0.5876 23 1 5.3956 -1.6558 1.8486 24 1 6.1916 -3.8759 0.2409 25 1 1.7966 -2.1463 -0.0080 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095660481.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:36 Heat of formation + Delta-G solvation = -1.778460 kcal Electronic energy + Delta-G solvation = -10273.465262 eV Core-core repulsion = 8377.125428 eV Total energy + Delta-G solvation = -1896.339834 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.32499 -36.85497 -33.50872 -31.25107 -28.51170 -27.47359 -24.63681 -22.26210 -19.78055 -19.04592 -17.82616 -16.77041 -15.96942 -15.51017 -15.14325 -14.61534 -14.29313 -13.83663 -13.70417 -13.02739 -12.79779 -12.68417 -12.55858 -12.32968 -11.91052 -11.58889 -10.89485 -10.52385 -9.61301 -9.43032 -9.13207 -8.44361 -6.30949 0.16704 0.78212 1.19330 1.54769 1.62364 1.81530 1.83132 2.61581 3.26962 4.02470 4.10421 4.17041 4.51117 4.55622 4.76531 4.83325 4.90108 5.09949 5.32941 5.54774 5.68648 5.83664 6.11754 6.55212 6.69398 6.91926 7.59924 8.92562 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.048672 B = 0.010624 C = 0.010201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.146022 B = 2634.878126 C = 2744.178856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.103 4.103 3 C -0.236 4.236 4 S 0.074 5.926 5 C -0.175 4.175 6 C 0.269 3.731 7 H 0.017 0.983 8 N -0.833 5.833 9 C -0.619 4.619 10 H 0.036 0.964 11 C -0.008 4.008 12 N -0.915 5.915 13 Si 1.110 2.890 14 H -0.283 1.283 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.173 4.173 18 H 0.076 0.924 19 H 0.069 0.931 20 H 0.084 0.916 21 H 0.189 0.811 22 H 0.329 0.671 23 H 0.320 0.680 24 H 0.278 0.722 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 9.357 1.236 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.370 4.370 4 S 0.338 5.662 5 C -0.294 4.294 6 C 0.158 3.842 7 H 0.035 0.965 8 N -0.361 5.361 9 C -0.658 4.658 10 H 0.054 0.946 11 C -0.212 4.212 12 N -0.550 5.550 13 Si 0.933 3.067 14 H -0.208 1.208 15 H -0.200 1.200 16 H -0.201 1.201 17 C -0.203 4.203 18 H 0.094 0.906 19 H 0.088 0.912 20 H 0.103 0.897 21 H 0.207 0.793 22 H 0.142 0.858 23 H 0.132 0.868 24 H 0.090 0.910 25 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.530 8.618 0.149 10.814 hybrid contribution -2.707 0.710 1.219 3.053 sum -9.237 9.328 1.368 13.199 Atomic orbital electron populations 1.20541 0.87458 1.03607 1.02964 1.19208 0.98965 0.91119 1.02253 1.25649 0.94674 1.03121 1.13591 1.83899 1.08116 0.99971 1.74223 1.26118 0.99659 0.98695 1.04940 1.17654 0.84859 0.88544 0.93164 0.96504 1.59205 1.32014 1.40470 1.04404 1.21964 1.27992 1.23365 0.92508 0.94587 1.27012 0.94065 0.92204 1.07938 1.70679 1.42283 1.39051 1.02992 0.83030 0.76277 0.76689 0.70686 1.20837 1.20038 1.20068 1.20192 0.92611 0.99991 1.07522 0.90572 0.91187 0.89690 0.79341 0.85815 0.86832 0.91028 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.92 10.14 71.24 0.72 -1.20 15 2 C -0.10 -3.24 5.80 -20.92 -0.12 -3.36 15 3 C -0.24 -7.10 10.98 66.72 0.73 -6.36 15 4 S 0.07 2.70 22.54 -56.49 -1.27 1.42 15 5 C -0.17 -7.61 5.38 24.59 0.13 -7.48 15 6 C 0.27 13.78 2.66 43.42 0.12 13.89 15 7 H 0.02 0.96 7.99 -2.39 -0.02 0.94 15 8 N -0.83 -39.53 7.71 -174.96 -1.35 -40.88 15 9 C -0.62 -35.41 8.71 25.60 0.22 -35.18 15 10 H 0.04 2.09 7.74 -2.91 -0.02 2.07 15 11 C -0.01 -0.47 5.39 84.65 0.46 -0.02 15 12 N -0.92 -56.20 13.51 21.45 0.29 -55.91 15 13 Si 1.11 51.15 29.90 68.60 2.05 53.20 15 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 16 H -0.28 -11.96 7.11 99.48 0.71 -11.26 15 17 C -0.17 -6.76 9.84 21.22 0.21 -6.55 15 18 H 0.08 1.56 8.14 -2.38 -0.02 1.54 15 19 H 0.07 1.47 8.13 -2.39 -0.02 1.45 15 20 H 0.08 1.48 8.12 -2.39 -0.02 1.46 15 21 H 0.19 4.24 8.06 -2.91 -0.02 4.21 15 22 H 0.33 15.21 8.32 -89.70 -0.75 14.47 15 23 H 0.32 13.38 9.06 -89.69 -0.81 12.57 15 24 H 0.28 17.24 6.39 -92.70 -0.59 16.65 15 25 H 0.13 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -64.87 233.89 2.01 -62.86 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.18 Total: 25.57 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 2.47 Total: -46.27 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -1.06 Total: -96.79 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.27 Total: 1.42 kcal Total: -64.87 2.01 -62.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095660481.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.082 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds