Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00454 * 2 1 4 4 H 1.48496 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47032 * 300.00506 * 3 2 1 6 6 H 1.48501 * 109.46761 * 60.00029 * 3 2 1 7 7 C 1.37884 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99968 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47299 * 299.99667 * 9 7 2 11 11 N 1.46897 * 109.47226 * 60.00345 * 9 7 2 12 12 C 1.50706 * 109.46879 * 179.97438 * 9 7 2 13 13 C 1.34519 * 125.78445 * 99.99994 * 12 9 7 14 14 C 1.41382 * 106.83677 * 179.97438 * 13 12 9 15 15 C 1.34517 * 106.84094 * 0.02562 * 14 13 12 16 16 C 1.50704 * 125.78808 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47132 * 89.99941 * 16 15 14 18 18 O 1.34295 * 125.79239 * 279.69279 * 12 9 7 19 19 H 0.97008 * 119.99799 * 359.97438 * 1 2 3 20 20 H 1.00903 * 110.99647 * 296.04015 * 11 9 7 21 21 H 1.00895 * 111.00305 * 59.99681 * 11 9 7 22 22 H 1.07994 * 126.57974 * 359.96390 * 13 12 9 23 23 H 1.08000 * 126.57944 * 180.02562 * 14 13 12 24 24 H 1.08994 * 109.47075 * 209.99508 * 16 15 14 25 25 H 1.09003 * 109.47057 * 330.00367 * 16 15 14 26 26 H 0.96693 * 113.99972 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 0.4059 -2.5767 -1.1997 12 6 2.2302 -3.6447 -0.0018 13 6 2.5981 -4.3662 1.0723 14 6 3.5268 -5.3310 0.6189 15 6 3.6713 -5.1409 -0.7049 16 6 4.5648 -5.9407 -1.6177 17 8 3.8377 -7.0545 -2.1400 18 8 2.8791 -4.1220 -1.0763 19 1 -0.4850 0.8401 0.0004 20 1 -0.3014 -1.8572 -1.1907 21 1 0.9635 -2.5251 -2.0389 22 1 2.2508 -4.2337 2.0862 23 1 4.0248 -6.0773 1.2201 24 1 4.9025 -5.3097 -2.4398 25 1 5.4278 -6.3006 -1.0575 26 1 4.3521 -7.6151 -2.7368 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095669183.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = -42.302952 kcal Electronic energy + Delta-G solvation = -12244.049768 eV Core-core repulsion = 9903.199790 eV Total energy + Delta-G solvation = -2340.849978 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.74436 -36.70951 -34.76582 -32.23027 -31.47706 -29.59165 -26.48597 -24.92598 -21.74153 -20.95285 -19.26611 -17.48634 -16.70154 -16.10380 -15.00811 -14.81037 -14.47264 -14.04641 -13.61371 -12.83577 -12.60624 -12.07594 -11.68855 -11.40576 -11.27162 -10.98039 -10.83998 -10.13780 -10.06295 -9.96201 -9.13495 -8.75820 -7.65534 -7.23245 -6.17336 -4.35292 2.42183 3.18389 3.26485 3.30697 3.42293 3.65278 4.28251 4.70895 5.05189 5.17138 5.35897 5.52974 5.70446 5.90348 6.47249 6.53927 6.68704 6.90776 7.26567 7.31246 7.63910 7.66981 7.90161 8.13024 8.55477 8.82408 9.04805 9.36854 10.79976 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.055004 B = 0.009016 C = 0.008776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.929349 B = 3104.843379 C = 3189.725771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.277 3.723 10 H 0.071 0.929 11 N -0.850 5.850 12 C 0.083 3.917 13 C -0.258 4.258 14 C -0.176 4.176 15 C -0.068 4.068 16 C 0.167 3.833 17 O -0.567 6.567 18 O -0.163 6.163 19 H 0.268 0.732 20 H 0.359 0.641 21 H 0.319 0.681 22 H 0.141 0.859 23 H 0.137 0.863 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -7.686 -2.004 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.167 3.833 10 H 0.088 0.912 11 N -0.380 5.380 12 C 0.030 3.970 13 C -0.277 4.277 14 C -0.196 4.196 15 C -0.117 4.117 16 C 0.090 3.910 17 O -0.373 6.373 18 O -0.059 6.059 19 H 0.078 0.922 20 H 0.176 0.824 21 H 0.128 0.872 22 H 0.159 0.841 23 H 0.155 0.845 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.501 -7.922 -1.653 10.381 hybrid contribution 1.353 1.604 -0.184 2.106 sum 7.854 -6.319 -1.837 10.246 Atomic orbital electron populations 1.69743 1.05880 1.27480 1.50000 1.25009 0.95016 0.99485 0.94023 0.86348 0.80090 0.82713 0.77768 1.19664 1.20777 1.20677 1.21808 0.93922 0.90678 1.52539 0.92266 1.17814 0.87126 0.85416 0.92938 0.91189 1.59428 1.18445 1.56137 1.03991 1.23671 0.94162 0.95838 0.83295 1.21399 1.05538 1.00690 1.00114 1.21414 1.02268 1.01681 0.94247 1.21622 1.01471 0.94540 0.94078 1.20139 0.90180 0.86005 0.94709 1.86634 1.42903 1.40771 1.66976 1.83972 1.45469 1.39623 1.36820 0.92232 0.82405 0.87218 0.84117 0.84526 0.92291 0.91111 0.77500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.42 11.54 55.43 0.64 -23.78 15 2 C 0.07 1.82 5.38 -17.82 -0.10 1.73 15 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.55 -15.12 8.71 -34.44 -0.30 -15.42 15 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 15 9 C 0.28 7.23 3.17 -70.02 -0.22 7.01 15 10 H 0.07 1.92 8.13 -51.93 -0.42 1.50 15 11 N -0.85 -21.39 9.18 -6.65 -0.06 -21.45 15 12 C 0.08 2.00 6.08 -35.62 -0.22 1.78 15 13 C -0.26 -5.59 10.80 -39.70 -0.43 -6.02 15 14 C -0.18 -3.39 10.81 -39.70 -0.43 -3.82 15 15 C -0.07 -1.33 6.95 -35.62 -0.25 -1.58 15 16 C 0.17 2.37 7.57 36.01 0.27 2.64 15 17 O -0.57 -7.98 13.64 -35.23 -0.48 -8.46 15 18 O -0.16 -3.80 10.53 5.74 0.06 -3.74 15 19 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 20 H 0.36 9.33 7.08 -39.29 -0.28 9.05 15 21 H 0.32 7.85 8.87 -39.29 -0.35 7.50 15 22 H 0.14 2.79 8.06 -52.49 -0.42 2.37 15 23 H 0.14 2.15 8.06 -52.49 -0.42 1.72 15 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.38 2.90 9.12 45.56 0.42 3.32 15 LS Contribution 236.86 15.07 3.57 3.57 Total: -1.00 -30.81 236.86 -4.83 -35.64 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -1.87 Total: 16.01 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -1.67 Total: -13.69 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.58 Total: -45.23 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.42 Total: -12.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.81 -4.83 -35.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095669183.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.666 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds