Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00454 * 2 1 4 4 H 1.48496 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47032 * 300.00506 * 3 2 1 6 6 H 1.48501 * 109.46761 * 60.00029 * 3 2 1 7 7 C 1.37884 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99968 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47299 * 299.99667 * 9 7 2 11 11 N 1.46897 * 109.47226 * 60.00345 * 9 7 2 12 12 C 1.50706 * 109.46879 * 179.97438 * 9 7 2 13 13 C 1.34519 * 125.78445 * 99.99994 * 12 9 7 14 14 C 1.41382 * 106.83677 * 179.97438 * 13 12 9 15 15 C 1.34517 * 106.84094 * 0.02562 * 14 13 12 16 16 C 1.50704 * 125.78808 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47132 * 89.99941 * 16 15 14 18 18 O 1.34295 * 125.79239 * 279.69279 * 12 9 7 19 19 H 0.97008 * 119.99799 * 359.97438 * 1 2 3 20 20 H 1.00903 * 110.99647 * 296.04015 * 11 9 7 21 21 H 1.00895 * 111.00305 * 59.99681 * 11 9 7 22 22 H 1.07994 * 126.57974 * 359.96390 * 13 12 9 23 23 H 1.08000 * 126.57944 * 180.02562 * 14 13 12 24 24 H 1.08994 * 109.47075 * 209.99508 * 16 15 14 25 25 H 1.09003 * 109.47057 * 330.00367 * 16 15 14 26 26 H 0.96693 * 113.99972 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 0.4059 -2.5767 -1.1997 12 6 2.2302 -3.6447 -0.0018 13 6 2.5981 -4.3662 1.0723 14 6 3.5268 -5.3310 0.6189 15 6 3.6713 -5.1409 -0.7049 16 6 4.5648 -5.9407 -1.6177 17 8 3.8377 -7.0545 -2.1400 18 8 2.8791 -4.1220 -1.0763 19 1 -0.4850 0.8401 0.0004 20 1 -0.3014 -1.8572 -1.1907 21 1 0.9635 -2.5251 -2.0389 22 1 2.2508 -4.2337 2.0862 23 1 4.0248 -6.0773 1.2201 24 1 4.9025 -5.3097 -2.4398 25 1 5.4278 -6.3006 -1.0575 26 1 4.3521 -7.6151 -2.7368 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095669183.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = -67.472871 kcal Electronic energy + Delta-G solvation = -12245.141218 eV Core-core repulsion = 9903.199790 eV Total energy + Delta-G solvation = -2341.941428 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.38277 -37.78923 -36.74511 -33.86786 -33.45736 -31.13623 -28.36223 -26.58003 -23.52745 -22.58448 -20.91928 -18.80972 -18.48432 -17.78444 -16.76267 -16.45875 -16.12003 -15.44123 -15.30693 -14.77893 -13.92215 -13.69285 -13.48134 -13.34580 -12.89937 -12.78721 -12.55083 -12.07915 -11.95213 -11.04794 -10.83797 -10.72154 -9.47506 -9.13670 -8.21098 -6.49030 0.85337 1.35847 1.38092 1.50093 1.76433 2.13276 2.34773 2.96799 3.60037 3.99981 4.11457 4.21816 4.36510 4.47312 4.54616 4.90728 4.97963 5.23361 5.38984 5.54608 5.69795 5.89408 6.39657 6.49512 6.75591 6.93854 6.97772 7.26909 8.74208 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.055004 B = 0.009016 C = 0.008776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.929349 B = 3104.843379 C = 3189.725771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.026 3.974 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.570 4.570 8 H 0.046 0.954 9 C 0.279 3.721 10 H 0.044 0.956 11 N -0.843 5.843 12 C 0.037 3.963 13 C -0.257 4.257 14 C -0.181 4.181 15 C -0.071 4.071 16 C 0.168 3.832 17 O -0.589 6.589 18 O -0.186 6.186 19 H 0.273 0.727 20 H 0.352 0.648 21 H 0.320 0.680 22 H 0.151 0.849 23 H 0.176 0.824 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.992 -8.299 -2.185 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.169 3.831 10 H 0.062 0.938 11 N -0.372 5.372 12 C -0.015 4.015 13 C -0.276 4.276 14 C -0.200 4.200 15 C -0.120 4.120 16 C 0.092 3.908 17 O -0.400 6.400 18 O -0.083 6.083 19 H 0.082 0.918 20 H 0.168 0.832 21 H 0.129 0.871 22 H 0.168 0.832 23 H 0.193 0.807 24 H 0.089 0.911 25 H 0.130 0.870 26 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.118 -8.564 -1.847 11.944 hybrid contribution 0.875 1.682 -0.148 1.902 sum 8.993 -6.883 -1.995 11.499 Atomic orbital electron populations 1.69824 1.06945 1.28541 1.49784 1.25766 0.95887 1.02518 0.93312 0.85338 0.78527 0.78590 0.78134 1.19853 1.19929 1.19887 1.21930 0.93360 0.91998 1.53654 0.93601 1.17542 0.87266 0.86310 0.91975 0.93784 1.59405 1.18227 1.55617 1.03981 1.23333 0.96248 0.97245 0.84665 1.21741 1.05355 1.00535 0.99995 1.21820 1.01849 1.01812 0.94564 1.22854 1.00162 0.93239 0.95768 1.20382 0.89539 0.85935 0.94984 1.86539 1.44388 1.41072 1.68024 1.83927 1.46347 1.41060 1.36951 0.91776 0.83212 0.87068 0.83172 0.80674 0.91111 0.86966 0.74205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.39 11.54 21.45 0.25 -50.14 15 2 C 0.03 1.42 5.38 84.66 0.46 1.88 15 3 Si 0.97 42.92 29.54 68.60 2.03 44.94 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.57 -32.05 8.71 25.60 0.22 -31.83 15 8 H 0.05 2.64 7.74 -2.91 -0.02 2.61 15 9 C 0.28 15.06 3.17 43.42 0.14 15.19 15 10 H 0.04 2.55 8.13 -2.39 -0.02 2.53 15 11 N -0.84 -43.67 9.18 -174.96 -1.61 -45.27 15 12 C 0.04 1.81 6.08 24.84 0.15 1.96 15 13 C -0.26 -11.07 10.80 22.19 0.24 -10.83 15 14 C -0.18 -6.57 10.81 22.19 0.24 -6.33 15 15 C -0.07 -2.66 6.95 24.83 0.17 -2.49 15 16 C 0.17 4.20 7.57 71.24 0.54 4.74 15 17 O -0.59 -14.69 13.64 -148.98 -2.03 -16.73 15 18 O -0.19 -8.68 10.53 -2.38 -0.03 -8.71 15 19 H 0.27 14.12 8.31 -92.70 -0.77 13.35 15 20 H 0.35 18.82 7.08 -89.69 -0.63 18.19 15 21 H 0.32 16.21 8.87 -89.70 -0.80 15.41 15 22 H 0.15 5.96 8.06 -2.91 -0.02 5.94 15 23 H 0.18 4.82 8.06 -2.91 -0.02 4.80 15 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.11 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.41 4.77 9.12 -74.06 -0.68 4.09 15 Total: -1.00 -66.59 236.86 -0.11 -66.70 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -0.88 Total: 36.93 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 2.16 Total: -27.72 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -1.36 Total: -95.42 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -2.06 Total: -25.44 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -66.59 -0.11 -66.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095669183.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.772 kcal (2) G-P(sol) polarization free energy of solvation -66.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds