Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48498 * 109.46999 * 239.99694 * 3 2 1 5 5 H 1.48496 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47127 * 119.99585 * 3 2 1 7 7 C 1.37886 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99623 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46944 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46692 * 304.99612 * 10 9 7 12 12 N 1.46900 * 109.47499 * 64.99674 * 10 9 7 13 13 C 1.50702 * 109.47055 * 185.00160 * 10 9 7 14 14 C 1.33388 * 125.20547 * 100.00234 * 13 10 9 15 15 C 1.38421 * 114.92066 * 180.29144 * 14 13 10 16 16 C 1.33395 * 114.92147 * 359.48238 * 15 14 13 17 17 S 1.75885 * 125.19995 * 280.01589 * 13 10 9 18 18 H 0.96996 * 119.99920 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47486 * 59.99717 * 9 7 2 20 20 H 1.09003 * 109.47282 * 299.99686 * 9 7 2 21 21 H 1.00902 * 110.99489 * 296.04884 * 12 10 9 22 22 H 1.00903 * 110.99923 * 59.99869 * 12 10 9 23 23 H 1.08002 * 122.53671 * 0.02562 * 14 13 10 24 24 H 1.08001 * 122.54223 * 179.72513 * 15 14 13 25 25 H 1.07998 * 125.20353 * 180.21324 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 1 2.9299 -3.5556 -0.8396 12 7 3.0074 -3.6535 1.2576 13 6 1.4958 -4.9638 -0.1220 14 6 1.3491 -5.6624 -1.2488 15 6 0.6131 -6.8277 -1.1209 16 6 0.1711 -7.0809 0.1120 17 16 0.6806 -5.7938 1.1970 18 1 -0.4850 0.8400 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 3.5691 -2.8187 1.3338 22 1 2.3946 -3.7509 2.0532 23 1 1.7691 -5.3409 -2.1905 24 1 0.4150 -7.4843 -1.9552 25 1 -0.4139 -7.9421 0.3990 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104526017.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = -1.589567 kcal Electronic energy + Delta-G solvation = -10162.804059 eV Core-core repulsion = 8266.472417 eV Total energy + Delta-G solvation = -1896.331642 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.02490 -36.87716 -34.48788 -30.38357 -29.80570 -26.30752 -24.46899 -22.14502 -20.27659 -18.70290 -17.71790 -16.73983 -16.63263 -15.70246 -15.04598 -14.64294 -14.20448 -13.70096 -13.55720 -13.21031 -13.09099 -12.72867 -12.54402 -12.27726 -11.92938 -11.56425 -11.26051 -10.63331 -9.76166 -9.30007 -9.27016 -8.23815 -6.37004 0.21182 0.81791 1.23206 1.40003 1.42226 1.50085 1.94020 2.38066 3.09327 3.76546 4.13670 4.29636 4.52661 4.67440 4.78694 4.81848 5.26516 5.31549 5.42640 5.54620 5.68335 5.71171 6.10871 6.26515 6.60107 6.78681 7.33350 8.87360 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.066212 B = 0.008756 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.784655 B = 3196.951222 C = 3259.486256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.013 3.987 10 C 0.165 3.835 11 H 0.082 0.918 12 N -0.827 5.827 13 C -0.164 4.164 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.224 4.224 17 S 0.083 5.917 18 H 0.264 0.736 19 H -0.012 1.012 20 H -0.008 1.008 21 H 0.349 0.651 22 H 0.331 0.669 23 H 0.142 0.858 24 H 0.167 0.833 25 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 -10.770 0.325 10.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.027 4.027 10 C 0.052 3.948 11 H 0.100 0.900 12 N -0.356 5.356 13 C -0.282 4.282 14 C -0.195 4.195 15 C -0.165 4.165 16 C -0.359 4.359 17 S 0.346 5.654 18 H 0.072 0.928 19 H 0.006 0.994 20 H 0.010 0.990 21 H 0.163 0.837 22 H 0.143 0.857 23 H 0.160 0.840 24 H 0.184 0.816 25 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.075 -11.048 1.583 11.353 hybrid contribution -0.365 1.676 -1.346 2.181 sum 1.711 -9.372 0.237 9.530 Atomic orbital electron populations 1.70111 1.07984 1.27916 1.51129 1.25973 0.95647 1.03401 0.94478 0.85467 0.78161 0.77928 0.79288 1.19232 1.21276 1.18855 1.21516 0.93584 0.91553 1.51212 0.91369 1.19671 0.94513 0.93396 0.95070 1.19846 0.93083 0.88100 0.93780 0.90047 1.59271 1.27451 1.45753 1.03092 1.24789 1.04939 1.01096 0.97390 1.20370 1.03762 0.96572 0.98758 1.20368 0.99870 0.97859 0.98438 1.25938 1.09216 1.04177 0.96583 1.84076 1.50676 1.17013 1.13657 0.92768 0.99357 0.99012 0.83687 0.85742 0.84000 0.81611 0.79121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.99 15 2 C 0.00 0.19 5.46 84.66 0.46 0.65 15 3 Si 0.97 43.32 29.54 68.60 2.03 45.34 15 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 7 C -0.54 -29.54 8.55 25.60 0.22 -29.32 15 8 H 0.07 3.49 7.15 -2.91 -0.02 3.47 15 9 C 0.01 0.66 4.60 29.85 0.14 0.80 15 10 C 0.17 6.99 3.19 44.17 0.14 7.13 15 11 H 0.08 3.46 8.12 -2.38 -0.02 3.44 15 12 N -0.83 -31.71 9.12 -171.79 -1.57 -33.28 15 13 C -0.16 -6.23 5.46 24.59 0.13 -6.10 15 14 C -0.16 -5.50 10.04 21.22 0.21 -5.28 15 15 C -0.14 -3.70 10.18 21.22 0.22 -3.48 15 16 C -0.22 -5.96 11.23 66.72 0.75 -5.21 15 17 S 0.08 2.73 22.54 -56.49 -1.27 1.45 15 18 H 0.26 15.04 8.31 -92.71 -0.77 14.27 15 19 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 20 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 15 21 H 0.35 13.30 7.90 -89.69 -0.71 12.59 15 22 H 0.33 12.50 8.33 -89.69 -0.75 11.75 15 23 H 0.14 4.41 8.06 -2.91 -0.02 4.38 15 24 H 0.17 3.37 8.06 -2.91 -0.02 3.35 15 25 H 0.19 3.65 8.06 -2.91 -0.02 3.63 15 Total: -1.00 -62.54 234.76 1.49 -61.05 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.26 Total: 22.24 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 2.27 Total: -40.83 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -1.28 Total: -89.26 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.27 Total: 1.45 kcal Total: -62.54 1.49 -61.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104526017.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.459 kcal (2) G-P(sol) polarization free energy of solvation -62.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds