Wall clock time and date at job start Mon Mar 30 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86793 * 120.00096 * 2 1 4 4 H 1.48507 * 109.47164 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47010 * 300.00030 * 3 2 1 6 6 H 1.48491 * 109.47194 * 60.00404 * 3 2 1 7 7 C 1.40045 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.41405 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.40655 * 119.82543 * 180.27276 * 9 7 2 11 11 C 1.38144 * 118.98084 * 180.27257 * 10 9 7 12 12 C 1.38971 * 118.58831 * 359.45701 * 11 10 9 13 13 C 1.38751 * 119.55711 * 0.28437 * 12 11 10 14 14 C 1.50705 * 119.49551 * 180.02562 * 13 12 11 15 15 Cl 1.80298 * 109.47026 * 89.99414 * 14 13 12 16 16 N 1.31424 * 121.01519 * 359.97438 * 13 12 11 17 17 H 0.97000 * 120.00250 * 359.97438 * 1 2 3 18 18 H 1.08003 * 120.51231 * 0.03105 * 10 9 7 19 19 H 1.08002 * 120.70911 * 179.74008 * 11 10 9 20 20 H 1.08000 * 120.22154 * 180.29815 * 12 11 10 21 21 H 1.09003 * 109.46905 * 209.99906 * 14 13 12 22 22 H 1.09000 * 109.47069 * 329.99736 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8826 2.3963 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2129 -0.0005 8 1 3.0875 -1.2129 -0.0010 9 6 1.3004 -2.4374 -0.0005 10 6 2.0072 -3.6534 0.0047 11 6 1.2989 -4.8394 -0.0011 12 6 -0.0897 -4.7846 -0.0004 13 6 -0.7261 -3.5517 0.0000 14 6 -2.2320 -3.4939 0.0014 15 17 -2.8310 -3.4709 1.7018 16 7 -0.0357 -2.4333 0.0004 17 1 -0.4850 0.8400 0.0004 18 1 3.0872 -3.6599 0.0093 19 1 1.8133 -5.7891 -0.0015 20 1 -0.6697 -5.6957 -0.0001 21 1 -2.5614 -2.5906 -0.5123 22 1 -2.6296 -4.3693 -0.5121 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104688166.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:35 Heat of formation + Delta-G solvation = 11.583200 kcal Electronic energy + Delta-G solvation = -10086.963467 eV Core-core repulsion = 8053.326238 eV Total energy + Delta-G solvation = -2033.637229 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.28873 -35.26126 -33.70821 -31.34545 -30.37649 -27.02527 -25.13531 -21.45394 -20.45673 -17.47458 -15.44158 -14.64972 -14.48135 -14.00912 -13.74482 -12.75792 -12.68402 -11.92203 -11.82990 -11.19067 -11.07115 -10.78061 -10.61125 -10.14515 -9.72484 -9.67957 -9.40771 -8.25709 -7.65603 -7.64422 -6.44553 -4.56153 2.33615 2.85751 3.08000 3.12059 3.14466 3.43194 3.92549 4.72908 5.41512 5.60888 5.81807 6.08194 6.18404 6.46639 6.70427 6.82985 7.05980 7.24816 7.50326 7.67300 7.95902 8.17431 8.61517 8.86656 10.00667 10.27246 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.038232 B = 0.012831 C = 0.010058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.188706 B = 2181.661322 C = 2783.296061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.430 4.430 8 H 0.085 0.915 9 C 0.254 3.746 10 C -0.269 4.269 11 C -0.060 4.060 12 C -0.300 4.300 13 C 0.129 3.871 14 C 0.040 3.960 15 Cl -0.194 7.194 16 N -0.465 5.465 17 H 0.273 0.727 18 H 0.100 0.900 19 H 0.097 0.903 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -2.225 -0.625 2.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.157 4.157 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.103 0.897 9 C 0.129 3.871 10 C -0.292 4.292 11 C -0.084 4.084 12 C -0.324 4.324 13 C -0.017 4.017 14 C -0.024 4.024 15 Cl -0.168 7.168 16 N -0.179 5.179 17 H 0.084 0.916 18 H 0.118 0.882 19 H 0.116 0.884 20 H 0.113 0.887 21 H 0.118 0.882 22 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.504 -1.247 -0.503 2.842 hybrid contribution 0.830 -0.183 0.089 0.855 sum -1.674 -1.430 -0.414 2.240 Atomic orbital electron populations 1.70120 1.07164 1.27779 1.28340 1.26073 0.94927 1.01100 0.93599 0.86269 0.80812 0.81164 0.78582 1.18418 1.19827 1.19793 1.19662 0.94297 0.89308 1.42815 0.89711 1.18550 0.87856 0.92058 0.88604 1.21773 0.98806 0.93608 1.15027 1.20829 0.93874 0.96713 0.97027 1.21017 0.94738 0.96776 1.19826 1.20728 0.93735 0.90336 0.96913 1.22943 0.92959 1.04212 0.82241 1.98676 1.89433 1.99391 1.29343 1.68487 1.07530 1.25653 1.16200 0.91584 0.88191 0.88442 0.88705 0.88172 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.80 11.46 55.55 0.64 -18.16 14 2 C 0.07 1.73 5.50 -17.34 -0.10 1.64 14 3 Si 0.91 18.49 29.56 -169.99 -5.02 13.47 14 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 14 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 14 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 7 C -0.43 -11.44 9.14 -37.70 -0.34 -11.78 14 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 14 9 C 0.25 6.95 6.55 -84.98 -0.56 6.39 14 10 C -0.27 -6.61 9.84 -38.70 -0.38 -6.99 14 11 C -0.06 -1.35 10.16 -39.34 -0.40 -1.75 14 12 C -0.30 -6.71 9.75 -39.12 -0.38 -7.09 14 13 C 0.13 3.07 6.16 -82.57 -0.51 2.56 14 14 C 0.04 0.78 6.93 36.01 0.25 1.03 14 15 Cl -0.19 -3.80 29.13 -51.86 -1.51 -5.31 14 16 N -0.47 -12.63 7.77 -7.37 -0.06 -12.68 14 17 H 0.27 6.52 8.29 -40.82 -0.34 6.18 14 18 H 0.10 2.25 8.06 -52.48 -0.42 1.83 14 19 H 0.10 1.85 8.06 -52.49 -0.42 1.43 14 20 H 0.09 1.87 8.06 -52.49 -0.42 1.44 14 21 H 0.10 1.96 8.14 -51.93 -0.42 1.54 14 22 H 0.09 1.44 8.08 -51.93 -0.42 1.02 14 LS Contribution 219.82 15.07 3.31 3.31 Total: -1.00 -28.49 219.82 -6.72 -35.21 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -1.66 Total: 0.18 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.42 Total: -16.01 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.58 Total: -30.85 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 17 Polarization: -3.80 SS G_CDS: -1.51 Total: -5.31 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.49 -6.72 -35.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104688166.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.792 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds