Wall clock time and date at job start Mon Mar 30 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86793 * 120.00096 * 2 1 4 4 H 1.48507 * 109.47164 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47010 * 300.00030 * 3 2 1 6 6 H 1.48491 * 109.47194 * 60.00404 * 3 2 1 7 7 C 1.40045 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.41405 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.40655 * 119.82543 * 180.27276 * 9 7 2 11 11 C 1.38144 * 118.98084 * 180.27257 * 10 9 7 12 12 C 1.38971 * 118.58831 * 359.45701 * 11 10 9 13 13 C 1.38751 * 119.55711 * 0.28437 * 12 11 10 14 14 C 1.50705 * 119.49551 * 180.02562 * 13 12 11 15 15 Cl 1.80298 * 109.47026 * 89.99414 * 14 13 12 16 16 N 1.31424 * 121.01519 * 359.97438 * 13 12 11 17 17 H 0.97000 * 120.00250 * 359.97438 * 1 2 3 18 18 H 1.08003 * 120.51231 * 0.03105 * 10 9 7 19 19 H 1.08002 * 120.70911 * 179.74008 * 11 10 9 20 20 H 1.08000 * 120.22154 * 180.29815 * 12 11 10 21 21 H 1.09003 * 109.46905 * 209.99906 * 14 13 12 22 22 H 1.09000 * 109.47069 * 329.99736 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7014 1.3463 -0.0006 5 1 1.8826 2.3963 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2129 -0.0005 8 1 3.0875 -1.2129 -0.0010 9 6 1.3004 -2.4374 -0.0005 10 6 2.0072 -3.6534 0.0047 11 6 1.2989 -4.8394 -0.0011 12 6 -0.0897 -4.7846 -0.0004 13 6 -0.7261 -3.5517 0.0000 14 6 -2.2320 -3.4939 0.0014 15 17 -2.8310 -3.4709 1.7018 16 7 -0.0357 -2.4333 0.0004 17 1 -0.4850 0.8400 0.0004 18 1 3.0872 -3.6599 0.0093 19 1 1.8133 -5.7891 -0.0015 20 1 -0.6697 -5.6957 -0.0001 21 1 -2.5614 -2.5906 -0.5123 22 1 -2.6296 -4.3693 -0.5121 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104688166.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:35 Heat of formation + Delta-G solvation = -4.823471 kcal Electronic energy + Delta-G solvation = -10087.674914 eV Core-core repulsion = 8053.326238 eV Total energy + Delta-G solvation = -2034.348676 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.12943 -36.84057 -35.55927 -33.12603 -32.23702 -28.81808 -26.94053 -23.30985 -22.25127 -19.36139 -17.25176 -16.38050 -16.30598 -15.72258 -15.39443 -14.42163 -14.35835 -13.66320 -13.60498 -12.82916 -12.79300 -12.65024 -12.33708 -11.82784 -11.37089 -11.23994 -11.21591 -10.11970 -9.52966 -9.51912 -8.29755 -6.51589 0.58183 1.09291 1.41339 1.48968 1.56162 1.77215 2.23045 2.87410 3.72607 3.91483 4.10756 4.47733 4.55415 4.76914 4.88947 4.99270 5.21298 5.43459 5.66065 5.84815 6.13832 6.25898 6.72802 6.94645 8.13724 8.44434 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.038232 B = 0.012831 C = 0.010058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.188706 B = 2181.661322 C = 2783.296061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.088 0.912 9 C 0.219 3.781 10 C -0.290 4.290 11 C -0.060 4.060 12 C -0.295 4.295 13 C 0.109 3.891 14 C 0.044 3.956 15 Cl -0.194 7.194 16 N -0.499 5.499 17 H 0.279 0.721 18 H 0.110 0.890 19 H 0.136 0.864 20 H 0.129 0.871 21 H 0.094 0.906 22 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 -2.813 -0.721 3.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.197 4.197 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.106 0.894 9 C 0.094 3.906 10 C -0.313 4.313 11 C -0.084 4.084 12 C -0.319 4.319 13 C -0.037 4.037 14 C -0.019 4.019 15 Cl -0.168 7.168 16 N -0.213 5.213 17 H 0.089 0.911 18 H 0.128 0.872 19 H 0.154 0.846 20 H 0.146 0.854 21 H 0.112 0.888 22 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.511 -1.865 -0.599 3.184 hybrid contribution 0.782 -0.164 0.123 0.808 sum -1.729 -2.029 -0.476 2.708 Atomic orbital electron populations 1.70208 1.08745 1.29012 1.29379 1.26950 0.95748 1.04405 0.92576 0.85101 0.79395 0.76132 0.78732 1.17825 1.19033 1.19332 1.20001 0.94732 0.90399 1.44737 0.89390 1.19035 0.88666 0.93440 0.89466 1.21980 0.99579 0.93824 1.15887 1.21286 0.94227 0.97565 0.95323 1.21463 0.95177 0.97572 1.17668 1.21399 0.95667 0.90300 0.96287 1.23023 0.90599 1.05860 0.82402 1.98676 1.89186 1.99429 1.29486 1.68471 1.07803 1.27584 1.17458 0.91077 0.87171 0.84636 0.85353 0.88786 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.37 11.46 21.84 0.25 -40.12 14 2 C 0.03 1.28 5.50 85.29 0.47 1.75 14 3 Si 0.99 38.21 29.56 68.60 2.03 40.23 14 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 14 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 14 6 H -0.27 -10.11 7.11 99.48 0.71 -9.40 14 7 C -0.47 -25.43 9.14 23.49 0.21 -25.21 14 8 H 0.09 4.49 7.85 -2.91 -0.02 4.46 14 9 C 0.22 12.16 6.55 40.24 0.26 12.43 14 10 C -0.29 -14.16 9.84 22.84 0.22 -13.93 14 11 C -0.06 -2.56 10.16 22.42 0.23 -2.33 14 12 C -0.30 -12.48 9.75 22.57 0.22 -12.26 14 13 C 0.11 5.05 6.16 42.74 0.26 5.31 14 14 C 0.04 1.65 6.93 71.24 0.49 2.14 14 15 Cl -0.19 -7.28 29.13 -2.72 -0.08 -7.36 14 16 N -0.50 -27.33 7.77 -177.22 -1.38 -28.71 14 17 H 0.28 13.53 8.29 -92.71 -0.77 12.76 14 18 H 0.11 4.96 8.06 -2.91 -0.02 4.93 14 19 H 0.14 4.65 8.06 -2.91 -0.02 4.63 14 20 H 0.13 4.50 8.06 -2.91 -0.02 4.48 14 21 H 0.09 3.62 8.14 -2.39 -0.02 3.60 14 22 H 0.13 3.73 8.08 -2.39 -0.02 3.71 14 Total: -1.00 -61.26 219.82 4.42 -56.84 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.22 Total: 11.23 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 2.38 Total: -32.11 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.13 Total: -68.83 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 17 Polarization: -7.28 SS G_CDS: -0.08 Total: -7.36 kcal Total: -61.26 4.42 -56.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104688166.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.015 kcal (2) G-P(sol) polarization free energy of solvation -61.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds