Wall clock time and date at job start Mon Mar 30 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86793 * 120.00070 * 2 1 4 4 H 1.48507 * 109.47165 * 239.99651 * 3 2 1 5 5 H 1.48500 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47585 * 119.99712 * 3 2 1 7 7 C 1.38960 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99462 * 191.20909 * 7 2 1 9 9 N 1.37202 * 120.00310 * 11.21774 * 7 2 1 10 10 C 1.36487 * 123.91677 * 23.32343 * 9 7 2 11 11 C 1.34631 * 112.16577 * 180.02562 * 10 9 7 12 12 C 1.41649 * 126.96124 * 179.97438 * 11 10 9 13 13 O 1.21673 * 119.99812 * 0.03321 * 12 11 10 14 14 O 1.34935 * 120.00225 * 180.02562 * 12 11 10 15 15 C 1.51579 * 106.08123 * 0.24587 * 11 10 9 16 16 C 1.34646 * 123.91724 * 203.34924 * 9 7 2 17 17 O 1.21230 * 126.96231 * 0.02562 * 16 9 7 18 18 H 0.96999 * 119.99892 * 0.02562 * 1 2 3 19 19 H 1.07998 * 123.91534 * 359.97438 * 10 9 7 20 20 H 0.96708 * 113.99887 * 180.02562 * 14 12 11 21 21 H 1.09000 * 110.61203 * 118.26012 * 15 11 10 22 22 H 1.08998 * 110.61137 * 241.24826 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1013 1.6963 -1.2125 5 1 1.2825 2.7464 -0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0082 -1.2035 0.0005 8 1 3.0728 -1.2123 0.1824 9 7 1.3418 -2.3804 -0.2301 10 6 0.1554 -2.4653 -0.8994 11 6 -0.2874 -3.7336 -0.9894 12 6 -1.4785 -4.1775 -1.6144 13 8 -2.2228 -3.3744 -2.1451 14 8 -1.7877 -5.4909 -1.6215 15 6 0.7434 -4.5895 -0.2806 16 6 1.7822 -3.5856 0.1781 17 8 2.8004 -3.8196 0.7930 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3680 -1.6138 -1.3085 20 1 -2.6186 -5.6970 -2.0714 21 1 0.2970 -5.0998 0.5729 22 1 1.1854 -5.3082 -0.9706 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107120675.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:15 Heat of formation + Delta-G solvation = -103.084423 kcal Electronic energy + Delta-G solvation = -12176.825074 eV Core-core repulsion = 9697.506319 eV Total energy + Delta-G solvation = -2479.318755 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.56926 -39.00299 -36.17196 -35.17110 -33.59004 -30.98035 -27.04644 -25.74942 -23.32767 -20.17147 -19.21902 -17.72761 -16.93986 -16.14515 -15.41374 -14.86591 -14.47032 -14.43354 -14.09370 -13.21897 -12.63394 -12.16859 -11.94373 -11.48999 -11.22757 -10.93647 -10.86231 -10.69240 -10.41098 -9.90237 -9.15695 -9.08477 -7.55089 -6.80741 -4.52794 1.86620 2.95407 3.03590 3.06974 3.39278 3.74800 4.05854 4.12334 4.55519 4.80570 5.31135 5.52364 6.13383 6.17974 6.55042 6.77591 6.97807 7.10213 7.14762 7.49212 7.96428 8.43174 8.72263 8.76574 9.24060 10.20999 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.042337 B = 0.012610 C = 0.009922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.193794 B = 2220.011362 C = 2821.475809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.352 4.352 8 H 0.113 0.887 9 N -0.371 5.371 10 C 0.267 3.733 11 C -0.392 4.392 12 C 0.558 3.442 13 O -0.558 6.558 14 O -0.520 6.520 15 C -0.093 4.093 16 C 0.480 3.520 17 O -0.518 6.518 18 H 0.285 0.715 19 H 0.186 0.814 20 H 0.395 0.605 21 H 0.103 0.897 22 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -3.266 -2.429 4.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.478 4.478 8 H 0.131 0.869 9 N -0.070 5.070 10 C 0.134 3.866 11 C -0.401 4.401 12 C 0.410 3.590 13 O -0.453 6.453 14 O -0.329 6.329 15 C -0.133 4.133 16 C 0.274 3.726 17 O -0.397 6.397 18 H 0.096 0.904 19 H 0.203 0.797 20 H 0.249 0.751 21 H 0.121 0.879 22 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.786 -2.865 -1.903 3.528 hybrid contribution -0.336 0.684 -0.171 0.781 sum -1.121 -2.180 -2.074 3.211 Atomic orbital electron populations 1.69710 1.06263 1.29705 1.43911 1.25547 0.95741 1.00799 0.94378 0.85705 0.78961 0.78845 0.79646 1.19097 1.20200 1.19203 1.19884 0.94533 0.81680 1.51683 0.86900 1.41830 1.17628 1.07843 1.39661 1.22278 0.84692 0.96969 0.82665 1.18575 1.01907 0.95094 1.24556 1.18128 0.84666 0.79339 0.76873 1.90872 1.52241 1.55018 1.47147 1.85063 1.44928 1.28210 1.74686 1.20828 0.94204 0.97449 1.00810 1.21301 0.87022 0.84899 0.79421 1.90587 1.26233 1.82870 1.40013 0.90389 0.79679 0.75070 0.87940 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.74 10.85 55.49 0.60 -21.14 14 2 C 0.04 1.06 5.32 -17.49 -0.09 0.96 14 3 Si 0.94 18.85 29.57 -169.99 -5.03 13.82 14 4 H -0.27 -5.22 7.11 56.52 0.40 -4.81 14 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 14 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 7 C -0.35 -9.07 9.73 -14.88 -0.14 -9.21 14 8 H 0.11 2.89 7.86 -52.48 -0.41 2.48 14 9 N -0.37 -9.28 2.80 -61.23 -0.17 -9.46 14 10 C 0.27 6.33 9.29 -16.76 -0.16 6.18 14 11 C -0.39 -8.38 6.16 -104.17 -0.64 -9.03 14 12 C 0.56 11.21 8.08 32.03 0.26 11.47 14 13 O -0.56 -12.61 17.55 -19.40 -0.34 -12.95 14 14 O -0.52 -8.25 13.39 -41.14 -0.55 -8.80 14 15 C -0.09 -1.85 6.75 -28.17 -0.19 -2.04 14 16 C 0.48 11.46 8.24 -10.62 -0.09 11.38 14 17 O -0.52 -13.44 17.79 5.60 0.10 -13.35 14 18 H 0.29 6.71 8.31 -40.82 -0.34 6.37 14 19 H 0.19 4.62 6.30 -52.49 -0.33 4.29 14 20 H 0.39 4.32 8.98 45.56 0.41 4.73 14 21 H 0.10 1.87 8.14 -51.93 -0.42 1.45 14 22 H 0.10 1.79 8.14 -51.93 -0.42 1.37 14 LS Contribution 214.55 15.07 3.23 3.23 Total: -1.00 -29.48 214.55 -3.52 -33.00 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -0.31 Total: 5.93 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.05 Total: 9.71 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.43 Total: -30.60 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.79 Total: -35.10 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.48 -3.52 -33.00 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107120675.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.087 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds