Wall clock time and date at job start Mon Mar 30 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86793 * 120.00070 * 2 1 4 4 H 1.48507 * 109.47165 * 239.99651 * 3 2 1 5 5 H 1.48500 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47585 * 119.99712 * 3 2 1 7 7 C 1.38960 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99462 * 191.20909 * 7 2 1 9 9 N 1.37202 * 120.00310 * 11.21774 * 7 2 1 10 10 C 1.36487 * 123.91677 * 23.32343 * 9 7 2 11 11 C 1.34631 * 112.16577 * 180.02562 * 10 9 7 12 12 C 1.41649 * 126.96124 * 179.97438 * 11 10 9 13 13 O 1.21673 * 119.99812 * 0.03321 * 12 11 10 14 14 O 1.34935 * 120.00225 * 180.02562 * 12 11 10 15 15 C 1.51579 * 106.08123 * 0.24587 * 11 10 9 16 16 C 1.34646 * 123.91724 * 203.34924 * 9 7 2 17 17 O 1.21230 * 126.96231 * 0.02562 * 16 9 7 18 18 H 0.96999 * 119.99892 * 0.02562 * 1 2 3 19 19 H 1.07998 * 123.91534 * 359.97438 * 10 9 7 20 20 H 0.96708 * 113.99887 * 180.02562 * 14 12 11 21 21 H 1.09000 * 110.61203 * 118.26012 * 15 11 10 22 22 H 1.08998 * 110.61137 * 241.24826 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1013 1.6963 -1.2125 5 1 1.2825 2.7464 -0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0082 -1.2035 0.0005 8 1 3.0728 -1.2123 0.1824 9 7 1.3418 -2.3804 -0.2301 10 6 0.1554 -2.4653 -0.8994 11 6 -0.2874 -3.7336 -0.9894 12 6 -1.4785 -4.1775 -1.6144 13 8 -2.2228 -3.3744 -2.1451 14 8 -1.7877 -5.4909 -1.6215 15 6 0.7434 -4.5895 -0.2806 16 6 1.7822 -3.5856 0.1781 17 8 2.8004 -3.8196 0.7930 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3680 -1.6138 -1.3085 20 1 -2.6186 -5.6970 -2.0714 21 1 0.2970 -5.0998 0.5729 22 1 1.1854 -5.3082 -0.9706 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107120675.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:15 Heat of formation + Delta-G solvation = -123.601061 kcal Electronic energy + Delta-G solvation = -12177.714742 eV Core-core repulsion = 9697.506319 eV Total energy + Delta-G solvation = -2480.208423 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.34834 -40.61897 -38.01455 -36.70817 -35.41602 -32.79431 -28.79459 -27.58833 -25.04327 -21.91262 -20.93050 -19.54561 -18.51886 -17.93630 -17.13695 -16.57160 -16.21677 -16.09224 -15.84669 -15.00001 -14.23984 -13.89131 -13.58463 -13.25917 -13.07588 -12.59156 -12.39928 -12.28932 -12.13065 -11.60228 -10.97389 -10.90380 -9.35772 -8.64700 -6.46775 0.10752 1.31831 1.39546 1.52396 1.69036 2.09076 2.35217 2.53828 2.83971 2.95485 3.63170 3.81106 4.54588 4.64848 4.80643 5.01477 5.22438 5.32632 5.65003 5.76700 6.12580 6.57561 6.86641 7.26191 7.39651 8.36787 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.042337 B = 0.012610 C = 0.009922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.193794 B = 2220.011362 C = 2821.475809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.009 3.991 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.386 5.386 10 C 0.243 3.757 11 C -0.371 4.371 12 C 0.569 3.431 13 O -0.582 6.582 14 O -0.500 6.500 15 C -0.079 4.079 16 C 0.464 3.536 17 O -0.554 6.554 18 H 0.290 0.710 19 H 0.169 0.831 20 H 0.421 0.579 21 H 0.128 0.872 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 -3.967 -2.848 5.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.196 4.196 3 Si 0.830 3.170 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.514 4.514 8 H 0.120 0.880 9 N -0.086 5.086 10 C 0.112 3.888 11 C -0.380 4.380 12 C 0.421 3.579 13 O -0.479 6.479 14 O -0.311 6.311 15 C -0.118 4.118 16 C 0.260 3.740 17 O -0.436 6.436 18 H 0.100 0.900 19 H 0.186 0.814 20 H 0.280 0.720 21 H 0.146 0.854 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.472 -3.605 -2.349 4.548 hybrid contribution -0.284 0.766 -0.103 0.824 sum -1.757 -2.839 -2.453 4.143 Atomic orbital electron populations 1.69792 1.07479 1.30729 1.44148 1.26434 0.96481 1.03559 0.93125 0.84744 0.77820 0.74670 0.79727 1.18368 1.19176 1.19055 1.20048 0.94578 0.83009 1.53726 0.87977 1.41978 1.18088 1.08127 1.40427 1.22140 0.84863 0.97610 0.84174 1.18874 1.02124 0.94526 1.22448 1.17892 0.83747 0.80411 0.75878 1.90881 1.52860 1.56288 1.47830 1.84991 1.46631 1.25113 1.74403 1.20876 0.92378 0.96581 1.01938 1.21941 0.87426 0.85457 0.79217 1.90551 1.27809 1.83301 1.41955 0.89963 0.81419 0.71976 0.85416 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.28 10.85 21.66 0.23 -45.05 14 2 C 0.01 0.45 5.32 84.94 0.45 0.91 14 3 Si 1.01 38.60 29.57 68.60 2.03 40.63 14 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 14 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 14 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 14 7 C -0.39 -20.52 9.73 84.03 0.82 -19.70 14 8 H 0.10 5.44 7.86 -2.91 -0.02 5.42 14 9 N -0.39 -19.62 2.80 -466.11 -1.30 -20.92 14 10 C 0.24 11.55 9.29 83.14 0.77 12.32 14 11 C -0.37 -15.14 6.16 -19.57 -0.12 -15.26 14 12 C 0.57 21.22 8.08 68.66 0.55 21.77 14 13 O -0.58 -25.16 17.55 19.27 0.34 -24.82 14 14 O -0.50 -13.62 13.39 -58.51 -0.78 -14.41 14 15 C -0.08 -2.92 6.75 29.66 0.20 -2.72 14 16 C 0.46 22.13 8.24 87.95 0.72 22.85 14 17 O -0.55 -29.11 17.79 -2.88 -0.05 -29.16 14 18 H 0.29 13.70 8.31 -92.71 -0.77 12.93 14 19 H 0.17 8.55 6.30 -2.91 -0.02 8.53 14 20 H 0.42 7.21 8.98 -74.05 -0.67 6.55 14 21 H 0.13 4.20 8.14 -2.39 -0.02 4.18 14 22 H 0.13 4.19 8.14 -2.39 -0.02 4.17 14 Total: -1.00 -63.44 214.55 4.47 -58.97 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.61 Total: 14.59 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 3.40 Total: 20.17 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -1.07 Total: -65.97 kcal Atomic # 8 Polarization: -67.90 SS G_CDS: -0.50 Total: -68.39 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -63.44 4.47 -58.97 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107120675.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.628 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds