Wall clock time and date at job start Mon Mar 30 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.54104 * 2 1 4 4 C 1.51316 * 110.60671 * 123.01096 * 2 1 3 5 5 O 1.21224 * 125.39650 * 298.49805 * 4 2 1 6 6 N 1.33872 * 109.20360 * 118.52247 * 4 2 1 7 7 C 1.37496 * 122.76074 * 180.02562 * 6 4 2 8 8 H 1.08001 * 120.00514 * 35.28753 * 7 6 4 9 9 C 1.38923 * 119.99824 * 215.29230 * 7 6 4 10 10 N 1.31351 * 120.00246 * 19.94139 * 9 7 6 11 11 Si 1.86808 * 119.99967 * 199.93839 * 9 7 6 12 12 H 1.48507 * 109.46869 * 59.99835 * 11 9 7 13 13 H 1.48492 * 109.47033 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46924 * 300.00289 * 11 9 7 15 15 C 1.34220 * 114.53089 * 359.90704 * 6 4 2 16 16 O 1.21226 * 125.59007 * 180.11022 * 15 6 4 17 17 C 1.51316 * 109.01661 * 0.14575 * 15 6 4 18 18 H 1.09000 * 110.60174 * 118.46068 * 17 15 6 19 19 C 1.52993 * 110.61087 * 241.27267 * 17 15 6 20 20 H 1.09002 * 109.46943 * 182.84563 * 1 2 3 21 21 H 1.08996 * 109.47699 * 302.84906 * 1 2 3 22 22 H 1.09005 * 109.47219 * 62.85200 * 1 2 3 23 23 H 0.97004 * 120.00335 * 180.02562 * 10 9 7 24 24 H 1.08996 * 109.47339 * 176.45036 * 19 17 15 25 25 H 1.09003 * 109.47215 * 296.45610 * 19 17 15 26 26 H 1.09002 * 109.47054 * 56.45097 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0625 -0.7716 1.1877 5 8 1.8683 -0.4919 2.3511 6 7 2.7826 -1.8119 0.7500 7 6 3.3966 -2.7018 1.5995 8 1 2.9246 -2.9711 2.5328 9 6 4.6244 -3.2544 1.2572 10 7 5.3805 -2.6683 0.3572 11 14 5.2001 -4.8311 2.0771 12 1 4.2272 -5.9179 1.7981 13 1 6.5320 -5.2101 1.5410 14 1 5.2983 -4.6191 3.5436 15 6 2.8543 -1.9172 -0.5861 16 8 3.4492 -2.7803 -1.1949 17 6 2.0728 -0.7831 -1.2128 18 1 2.7275 -0.1527 -1.8146 19 6 0.9219 -1.3266 -2.0617 20 1 -0.3633 -1.0264 0.0510 21 1 -0.3634 0.5574 0.8633 22 1 -0.3634 0.4689 -0.9145 23 1 6.2377 -3.0543 0.1180 24 1 0.3346 -0.4957 -2.4523 25 1 1.3251 -1.9080 -2.8909 26 1 0.2861 -1.9636 -1.4467 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117871425.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:38 Heat of formation + Delta-G solvation = -89.743745 kcal Electronic energy + Delta-G solvation = -12999.625195 eV Core-core repulsion = 10656.718029 eV Total energy + Delta-G solvation = -2342.907166 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.52543 -39.01008 -36.77823 -36.19070 -33.82960 -30.34421 -28.59835 -25.84432 -24.78348 -21.56649 -21.10173 -19.09798 -17.88603 -16.93686 -16.55974 -16.46400 -15.72744 -15.31689 -15.01326 -14.41548 -13.89096 -13.71210 -13.48468 -13.01396 -12.88540 -12.73950 -12.41962 -12.34179 -12.07089 -11.70039 -11.39285 -10.91255 -10.43301 -9.99489 -8.55928 -6.40638 0.94561 1.31773 1.38645 1.46008 2.12271 2.35208 2.68397 3.01238 3.41166 3.66078 3.79681 4.03797 4.41580 4.50202 4.65537 4.80463 4.99089 5.09831 5.18063 5.18884 5.23930 5.47419 5.82803 6.06718 6.66946 6.96266 7.19826 7.76730 8.54226 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.048281 B = 0.014497 C = 0.012220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.795668 B = 1930.942422 C = 2290.686818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.111 4.111 3 H 0.135 0.865 4 C 0.482 3.518 5 O -0.560 6.560 6 N -0.430 5.430 7 C -0.411 4.411 8 H 0.085 0.915 9 C 0.018 3.982 10 N -0.861 5.861 11 Si 0.993 3.007 12 H -0.267 1.267 13 H -0.271 1.271 14 H -0.260 1.260 15 C 0.490 3.510 16 O -0.514 6.514 17 C -0.115 4.115 18 H 0.126 0.874 19 C -0.126 4.126 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.113 0.887 23 H 0.275 0.725 24 H 0.113 0.887 25 H 0.057 0.943 26 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 4.407 -5.317 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.132 4.132 3 H 0.153 0.847 4 C 0.274 3.726 5 O -0.441 6.441 6 N -0.159 5.159 7 C -0.537 4.537 8 H 0.102 0.898 9 C -0.190 4.190 10 N -0.494 5.494 11 Si 0.814 3.186 12 H -0.192 1.192 13 H -0.196 1.196 14 H -0.184 1.184 15 C 0.282 3.718 16 O -0.389 6.389 17 C -0.137 4.137 18 H 0.144 0.856 19 C -0.183 4.183 20 H 0.070 0.930 21 H 0.082 0.918 22 H 0.131 0.869 23 H 0.084 0.916 24 H 0.132 0.868 25 H 0.076 0.924 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.420 4.065 -5.156 9.908 hybrid contribution 0.916 -0.849 0.704 1.433 sum -6.505 3.216 -4.452 8.513 Atomic orbital electron populations 1.21766 0.89333 1.02693 1.04630 1.22131 1.00453 1.00716 0.89916 0.84749 1.21693 0.79301 0.80691 0.90889 1.90514 1.61212 1.70727 1.21625 1.42709 1.41539 1.23287 1.08412 1.19556 1.04294 1.24790 1.05053 0.89754 1.26280 0.94430 1.01644 0.96641 1.69938 1.10278 1.38193 1.30989 0.85042 0.77590 0.77321 0.78648 1.19227 1.19570 1.18399 1.21435 0.80675 0.87500 0.82236 1.90508 1.41946 1.39637 1.66824 1.22134 0.99226 0.94823 0.97484 0.85606 1.21742 0.95587 1.02566 0.98367 0.92952 0.91763 0.86896 0.91580 0.86828 0.92370 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.10 71.98 0.58 -2.47 15 2 C -0.11 -3.60 3.69 -10.93 -0.04 -3.64 15 3 H 0.13 3.65 8.14 -2.39 -0.02 3.63 15 4 C 0.48 23.17 7.36 87.99 0.65 23.82 15 5 O -0.56 -30.20 17.64 -2.86 -0.05 -30.25 15 6 N -0.43 -23.48 2.65 -583.05 -1.55 -25.02 15 7 C -0.41 -24.70 9.33 83.97 0.78 -23.92 15 8 H 0.08 5.10 7.91 -2.91 -0.02 5.08 15 9 C 0.02 1.06 4.67 84.93 0.40 1.45 15 10 N -0.86 -51.86 11.28 21.65 0.24 -51.62 15 11 Si 0.99 45.42 29.60 68.60 2.03 47.45 15 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 14 H -0.26 -11.26 7.11 99.48 0.71 -10.56 15 15 C 0.49 24.60 6.69 87.94 0.59 25.18 15 16 O -0.51 -29.59 15.23 -2.86 -0.04 -29.63 15 17 C -0.12 -3.88 3.68 -10.93 -0.04 -3.92 15 18 H 0.13 3.73 8.14 -2.39 -0.02 3.71 15 19 C -0.13 -3.18 8.10 71.98 0.58 -2.59 15 20 H 0.05 1.36 6.79 -2.39 -0.02 1.34 15 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.11 1.72 6.90 -2.38 -0.02 1.70 15 23 H 0.27 15.57 8.31 -92.71 -0.77 14.80 15 24 H 0.11 1.81 6.97 -2.39 -0.02 1.79 15 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 26 H 0.05 1.46 6.71 -2.39 -0.02 1.45 15 Total: -1.00 -76.84 225.48 5.32 -71.52 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.18 Total: 3.64 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 3.50 Total: 13.91 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.30 Total: -76.64 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -0.09 Total: -59.88 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.84 5.32 -71.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117871425.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.222 kcal (2) G-P(sol) polarization free energy of solvation -76.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds