Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 120.00427 * 2 1 4 4 H 1.48502 * 109.47137 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47110 * 119.99817 * 3 2 1 6 6 H 1.48502 * 109.47251 * 239.99941 * 3 2 1 7 7 C 1.40313 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99771 * 159.51674 * 7 2 1 9 9 C 1.40540 * 120.00249 * 339.52741 * 7 2 1 10 10 C 1.44191 * 123.71016 * 335.42055 * 9 7 2 11 11 C 1.32768 * 114.42760 * 179.76044 * 10 9 7 12 12 S 1.75476 * 111.35914 * 0.49768 * 11 10 9 13 13 C 1.39539 * 123.71469 * 155.71571 * 9 7 2 14 14 C 1.46238 * 125.23177 * 359.97438 * 13 9 7 15 15 N 1.34777 * 120.00104 * 180.02562 * 14 13 9 16 16 O 1.21761 * 119.99721 * 359.97438 * 14 13 9 17 17 H 0.96997 * 119.99945 * 174.00079 * 1 2 3 18 18 H 1.08001 * 122.78654 * 0.02562 * 10 9 7 19 19 H 1.07996 * 124.31873 * 180.22838 * 11 10 9 20 20 H 0.96998 * 119.99618 * 359.97438 * 15 14 13 21 21 H 0.96999 * 119.99696 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 1.2756 2.7464 -0.0006 5 1 3.0942 1.6962 1.2125 6 1 3.0943 1.6963 -1.2125 7 6 2.0079 -1.2152 0.0005 8 1 3.0367 -1.2449 -0.3268 9 6 1.3718 -2.3937 0.4268 10 6 0.2459 -2.4146 1.3273 11 6 -0.2140 -3.6291 1.6033 12 16 0.7178 -4.8675 0.7805 13 6 1.7639 -3.6726 0.0297 14 6 2.8746 -3.9722 -0.8731 15 7 3.1616 -5.2510 -1.1873 16 8 3.5396 -3.0662 -1.3417 17 1 -0.4850 -0.8354 -0.0878 18 1 -0.1900 -1.5165 1.7396 19 1 -1.0517 -3.8295 2.2547 20 1 2.6316 -5.9727 -0.8142 21 1 3.8986 -5.4497 -1.7858 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139526208.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -33.509545 kcal Electronic energy + Delta-G solvation = -10202.939463 eV Core-core repulsion = 8169.390572 eV Total energy + Delta-G solvation = -2033.548891 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.01604 -36.29291 -33.02826 -32.44069 -28.93417 -25.76902 -22.62885 -20.38918 -19.04717 -17.69494 -16.37802 -15.62658 -14.36361 -14.12314 -13.81393 -13.45127 -12.97178 -12.17258 -11.92340 -11.45380 -11.08130 -10.71596 -10.43643 -10.09619 -9.75508 -9.16862 -8.68176 -8.56329 -7.78961 -7.36590 -7.32583 -4.59723 2.02437 2.93526 3.06294 3.11382 3.33081 3.54171 3.68039 3.91571 4.44128 4.73902 5.11079 5.82776 6.38085 6.73736 6.96910 7.18469 7.27161 7.72448 7.78234 7.96124 8.39212 8.47841 8.73555 9.60801 9.76777 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.039751 B = 0.015143 C = 0.011330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.224184 B = 1848.543820 C = 2470.751445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.028 3.972 3 Si 1.075 2.925 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.425 4.425 8 H 0.110 0.890 9 C 0.111 3.889 10 C -0.142 4.142 11 C -0.187 4.187 12 S -0.036 6.036 13 C -0.441 4.441 14 C 0.599 3.401 15 N -0.878 5.878 16 O -0.571 6.571 17 H 0.300 0.700 18 H 0.131 0.869 19 H 0.142 0.858 20 H 0.387 0.613 21 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 -3.456 1.793 3.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.196 4.196 3 Si 0.897 3.103 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.455 4.455 8 H 0.128 0.872 9 C 0.100 3.900 10 C -0.175 4.175 11 C -0.321 4.321 12 S 0.219 5.781 13 C -0.560 4.560 14 C 0.394 3.606 15 N -0.441 5.441 16 O -0.455 6.455 17 H 0.115 0.885 18 H 0.149 0.851 19 H 0.159 0.841 20 H 0.214 0.786 21 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.108 -2.679 1.615 3.130 hybrid contribution 0.029 -0.868 0.038 0.869 sum -0.079 -3.547 1.653 3.914 Atomic orbital electron populations 1.70438 1.08386 1.34518 1.26723 1.27578 0.95669 1.05288 0.91016 0.83489 0.75542 0.72598 0.78702 1.19646 1.19587 1.19401 1.20999 1.02072 0.91302 1.31172 0.87239 1.17924 0.89551 0.92456 0.90028 1.21597 0.98658 0.96943 1.00336 1.24949 1.04491 0.96636 1.06045 1.82712 1.30824 1.12668 1.51870 1.22468 1.14540 0.94511 1.24492 1.16811 0.82729 0.81419 0.79621 1.43731 1.37931 1.08194 1.54223 1.90684 1.53029 1.45275 1.56513 0.88537 0.85102 0.84075 0.78570 0.78492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.76 12.49 55.57 0.69 -19.07 14 2 C 0.03 0.71 5.24 -17.28 -0.09 0.62 14 3 Si 1.07 21.45 29.98 -169.99 -5.10 16.35 14 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 14 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 14 7 C -0.43 -11.67 8.44 -37.93 -0.32 -11.99 14 8 H 0.11 3.18 6.13 -52.48 -0.32 2.86 14 9 C 0.11 2.98 5.40 -106.21 -0.57 2.41 14 10 C -0.14 -3.39 8.19 -39.12 -0.32 -3.71 14 11 C -0.19 -3.96 11.07 28.86 0.32 -3.64 14 12 S -0.04 -0.77 22.25 -107.50 -2.39 -3.16 14 13 C -0.44 -11.36 6.51 -35.89 -0.23 -11.59 14 14 C 0.60 15.12 8.04 -13.05 -0.10 15.02 14 15 N -0.88 -16.96 8.87 30.17 0.27 -16.70 14 16 O -0.57 -16.29 15.30 5.13 0.08 -16.22 14 17 H 0.30 7.75 6.23 -40.82 -0.25 7.49 14 18 H 0.13 3.05 6.79 -52.49 -0.36 2.70 14 19 H 0.14 2.47 8.06 -52.49 -0.42 2.05 14 20 H 0.39 6.63 7.91 -40.82 -0.32 6.31 14 21 H 0.39 6.45 8.93 -40.82 -0.36 6.09 14 LS Contribution 207.13 15.07 3.12 3.12 Total: -1.00 -30.05 207.13 -5.49 -35.54 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.84 Total: 13.01 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.32 Total: -12.88 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.96 Total: -35.76 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.08 Total: -16.22 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.10 Total: 16.35 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.39 Total: -3.16 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -30.05 -5.49 -35.54 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139526208.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.027 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds