Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35807 * 117.00122 * 2 1 4 4 C 1.38637 * 120.76481 * 0.28250 * 3 2 1 5 5 C 1.40529 * 118.94845 * 180.27894 * 4 3 2 6 6 C 1.41331 * 119.77438 * 179.71246 * 5 4 3 7 7 H 1.07997 * 120.00283 * 6.80570 * 6 5 4 8 8 C 1.39999 * 120.00143 * 186.80696 * 6 5 4 9 9 N 1.30765 * 120.00473 * 182.54778 * 8 6 5 10 10 Si 1.86807 * 119.99720 * 2.54862 * 8 6 5 11 11 H 1.48502 * 109.46783 * 179.97438 * 10 8 6 12 12 H 1.48491 * 109.47282 * 299.99849 * 10 8 6 13 13 H 1.48503 * 109.46845 * 60.00286 * 10 8 6 14 14 N 1.33707 * 120.45251 * 359.43553 * 5 4 3 15 15 C 1.31456 * 121.66375 * 0.27390 * 14 5 4 16 16 C 1.38867 * 121.02857 * 0.02562 * 15 14 5 17 17 F 1.35099 * 120.28221 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.46331 * 299.99474 * 1 2 3 19 19 H 1.08997 * 109.47342 * 59.99747 * 1 2 3 20 20 H 1.09008 * 109.47095 * 180.02562 * 1 2 3 21 21 H 1.07993 * 120.53021 * 359.97438 * 4 3 2 22 22 H 0.96999 * 119.99680 * 354.85062 * 9 8 6 23 23 H 1.08005 * 119.48425 * 180.02562 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2100 0.0000 4 6 1.3062 2.3827 0.0059 5 6 1.9836 3.6140 -0.0003 6 6 1.2470 4.8202 -0.0007 7 1 0.1734 4.7974 0.1147 8 6 1.9090 6.0446 -0.1505 9 7 1.2339 7.1634 -0.1009 10 14 3.7570 6.0802 -0.4213 11 1 4.2115 7.4881 -0.5495 12 1 4.4389 5.4427 0.7335 13 1 4.0896 5.3381 -1.6639 14 7 3.3201 3.6522 -0.0004 15 6 4.0418 2.5535 0.0000 16 6 3.4402 1.3019 -0.0001 17 9 4.1966 0.1825 0.0008 18 1 -0.3632 0.5138 0.8901 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 0.2268 2.3506 0.0101 22 1 0.2663 7.1434 -0.0353 23 1 5.1195 2.6254 0.0004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213882979.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -72.583694 kcal Electronic energy + Delta-G solvation = -12139.554345 eV Core-core repulsion = 9673.930990 eV Total energy + Delta-G solvation = -2465.623355 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.59085 -39.32257 -37.45765 -33.86834 -30.42870 -30.32295 -27.19888 -25.35048 -22.27626 -21.32639 -18.79401 -17.17639 -16.41527 -16.12206 -15.47379 -14.62365 -14.25474 -14.04325 -13.46629 -13.03024 -12.75955 -12.45043 -12.06412 -11.67665 -11.20753 -10.86743 -10.52557 -10.20196 -9.78672 -9.42313 -8.19806 -7.92795 -7.81984 -7.44785 -4.99117 2.21449 2.35430 3.54963 3.57775 3.69624 3.94863 4.34369 4.41978 5.26030 5.30727 5.39779 5.46630 5.58203 5.68617 6.04220 6.14052 6.29734 6.76749 6.97762 7.24023 7.30605 7.71000 7.87489 8.15372 8.41230 9.20250 9.81783 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.045841 B = 0.013571 C = 0.010560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.659636 B = 2062.738446 C = 2650.848296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.166 3.834 4 C -0.329 4.329 5 C 0.260 3.740 6 C -0.457 4.457 7 H 0.084 0.916 8 C 0.042 3.958 9 N -0.792 5.792 10 Si 1.152 2.848 11 H -0.329 1.329 12 H -0.275 1.275 13 H -0.290 1.290 14 N -0.568 5.568 15 C 0.165 3.835 16 C -0.136 4.136 17 F -0.157 7.157 18 H 0.053 0.947 19 H 0.053 0.947 20 H 0.092 0.908 21 H 0.119 0.881 22 H 0.285 0.715 23 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -6.710 -0.165 6.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.231 6.231 3 C 0.115 3.885 4 C -0.352 4.352 5 C 0.139 3.861 6 C -0.487 4.487 7 H 0.102 0.898 8 C -0.180 4.180 9 N -0.413 5.413 10 Si 0.985 3.015 11 H -0.262 1.262 12 H -0.203 1.203 13 H -0.218 1.218 14 N -0.288 5.288 15 C 0.001 3.999 16 C -0.161 4.161 17 F -0.136 7.136 18 H 0.072 0.928 19 H 0.072 0.928 20 H 0.110 0.890 21 H 0.137 0.863 22 H 0.096 0.904 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.230 -5.069 -0.306 5.225 hybrid contribution -2.274 -1.984 0.217 3.025 sum -1.044 -7.053 -0.089 7.130 Atomic orbital electron populations 1.22945 0.79050 1.02807 1.01534 1.85995 1.20942 1.27405 1.88759 1.19128 0.90758 0.84463 0.94181 1.21566 0.99348 0.91430 1.22831 1.18418 0.87495 0.92656 0.87563 1.20826 0.96159 0.91183 1.40555 0.89777 1.27948 1.10926 0.90446 0.88696 1.70665 1.11210 1.29660 1.29747 0.81882 0.69821 0.70575 0.79199 1.26187 1.20264 1.21790 1.66689 1.07301 1.27974 1.26870 1.22169 0.99468 0.85905 0.92329 1.17463 0.85575 0.83596 1.29486 1.91305 1.75467 1.50515 1.96324 0.92849 0.92806 0.88960 0.86290 0.90371 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.84 101.05 0.99 1.47 14 2 O -0.32 -6.40 10.41 -19.14 -0.20 -6.60 14 3 C 0.17 3.73 6.73 -38.87 -0.26 3.47 14 4 C -0.33 -7.61 8.83 -38.57 -0.34 -7.95 14 5 C 0.26 6.62 6.39 -85.01 -0.54 6.08 14 6 C -0.46 -11.96 9.57 -37.75 -0.36 -12.33 14 7 H 0.08 2.17 8.05 -52.49 -0.42 1.75 14 8 C 0.04 1.11 5.52 -17.35 -0.10 1.01 14 9 N -0.79 -20.75 13.65 55.55 0.76 -19.99 14 10 Si 1.15 27.33 25.55 -169.99 -4.34 22.98 14 11 H -0.33 -7.69 7.11 56.52 0.40 -7.29 14 12 H -0.28 -6.48 6.67 56.52 0.38 -6.10 14 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 14 14 N -0.57 -14.17 4.54 -11.12 -0.05 -14.22 14 15 C 0.17 3.71 11.16 -17.48 -0.20 3.51 14 16 C -0.14 -3.09 7.38 -38.78 -0.29 -3.38 14 17 F -0.16 -3.45 17.17 2.25 0.04 -3.41 14 18 H 0.05 0.76 7.69 -51.93 -0.40 0.36 14 19 H 0.05 0.77 7.72 -51.93 -0.40 0.37 14 20 H 0.09 1.05 8.14 -51.92 -0.42 0.63 14 21 H 0.12 2.50 6.45 -52.49 -0.34 2.16 14 22 H 0.28 7.08 8.72 -40.82 -0.36 6.73 14 23 H 0.15 2.77 8.06 -52.48 -0.42 2.34 14 LS Contribution 212.46 15.07 3.20 3.20 Total: -1.00 -28.42 212.46 -3.27 -31.69 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -1.58 Total: -5.54 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.09 Total: -8.11 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.71 Total: -34.21 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.20 Total: -6.60 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.04 Total: -3.41 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.34 Total: 22.98 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.42 -3.27 -31.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213882979.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.897 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds