Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35807 * 117.00122 * 2 1 4 4 C 1.38637 * 120.76481 * 0.28250 * 3 2 1 5 5 C 1.40529 * 118.94845 * 180.27894 * 4 3 2 6 6 C 1.41331 * 119.77438 * 179.71246 * 5 4 3 7 7 H 1.07997 * 120.00283 * 6.80570 * 6 5 4 8 8 C 1.39999 * 120.00143 * 186.80696 * 6 5 4 9 9 N 1.30765 * 120.00473 * 182.54778 * 8 6 5 10 10 Si 1.86807 * 119.99720 * 2.54862 * 8 6 5 11 11 H 1.48502 * 109.46783 * 179.97438 * 10 8 6 12 12 H 1.48491 * 109.47282 * 299.99849 * 10 8 6 13 13 H 1.48503 * 109.46845 * 60.00286 * 10 8 6 14 14 N 1.33707 * 120.45251 * 359.43553 * 5 4 3 15 15 C 1.31456 * 121.66375 * 0.27390 * 14 5 4 16 16 C 1.38867 * 121.02857 * 0.02562 * 15 14 5 17 17 F 1.35099 * 120.28221 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.46331 * 299.99474 * 1 2 3 19 19 H 1.08997 * 109.47342 * 59.99747 * 1 2 3 20 20 H 1.09008 * 109.47095 * 180.02562 * 1 2 3 21 21 H 1.07993 * 120.53021 * 359.97438 * 4 3 2 22 22 H 0.96999 * 119.99680 * 354.85062 * 9 8 6 23 23 H 1.08005 * 119.48425 * 180.02562 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2100 0.0000 4 6 1.3062 2.3827 0.0059 5 6 1.9836 3.6140 -0.0003 6 6 1.2470 4.8202 -0.0007 7 1 0.1734 4.7974 0.1147 8 6 1.9090 6.0446 -0.1505 9 7 1.2339 7.1634 -0.1009 10 14 3.7570 6.0802 -0.4213 11 1 4.2115 7.4881 -0.5495 12 1 4.4389 5.4427 0.7335 13 1 4.0896 5.3381 -1.6639 14 7 3.3201 3.6522 -0.0004 15 6 4.0418 2.5535 0.0000 16 6 3.4402 1.3019 -0.0001 17 9 4.1966 0.1825 0.0008 18 1 -0.3632 0.5138 0.8901 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 0.2268 2.3506 0.0101 22 1 0.2663 7.1434 -0.0353 23 1 5.1195 2.6254 0.0004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213882979.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -90.576383 kcal Electronic energy + Delta-G solvation = -12140.334567 eV Core-core repulsion = 9673.930990 eV Total energy + Delta-G solvation = -2466.403576 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.37306 -41.04048 -39.14181 -35.79041 -32.28053 -32.08179 -28.57379 -27.20977 -23.99049 -23.16822 -20.66465 -18.89520 -18.19695 -17.85284 -17.03656 -16.43357 -15.89136 -15.66107 -15.20804 -14.77984 -14.60923 -14.30034 -13.94494 -13.21060 -12.73517 -12.43681 -12.28250 -11.99478 -11.71825 -11.33399 -10.02695 -9.79496 -9.60403 -9.39447 -6.94779 0.36929 0.54381 1.65373 1.70197 2.08166 2.21319 2.47322 2.52594 3.35659 3.55865 3.81851 4.13466 4.27914 4.31526 4.46916 4.56940 4.64356 4.97497 5.15384 5.28521 5.54014 5.85168 5.98858 6.38177 6.50776 7.34037 7.86658 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.045841 B = 0.013571 C = 0.010560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.659636 B = 2062.738446 C = 2650.848296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.328 6.328 3 C 0.166 3.834 4 C -0.333 4.333 5 C 0.249 3.751 6 C -0.485 4.485 7 H 0.075 0.925 8 C 0.019 3.981 9 N -0.814 5.814 10 Si 1.180 2.820 11 H -0.327 1.327 12 H -0.272 1.272 13 H -0.291 1.291 14 N -0.586 5.586 15 C 0.162 3.838 16 C -0.137 4.137 17 F -0.151 7.151 18 H 0.058 0.942 19 H 0.059 0.941 20 H 0.132 0.868 21 H 0.135 0.865 22 H 0.285 0.715 23 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -8.202 -0.184 8.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.240 6.240 3 C 0.115 3.885 4 C -0.355 4.355 5 C 0.127 3.873 6 C -0.517 4.517 7 H 0.093 0.907 8 C -0.200 4.200 9 N -0.436 5.436 10 Si 1.011 2.989 11 H -0.260 1.260 12 H -0.199 1.199 13 H -0.219 1.219 14 N -0.307 5.307 15 C -0.001 4.001 16 C -0.162 4.162 17 F -0.131 7.131 18 H 0.077 0.923 19 H 0.077 0.923 20 H 0.150 0.850 21 H 0.153 0.847 22 H 0.096 0.904 23 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.635 -6.588 -0.321 6.796 hybrid contribution -2.431 -1.763 0.228 3.012 sum -0.797 -8.352 -0.093 8.390 Atomic orbital electron populations 1.23350 0.76178 1.05671 1.02050 1.85998 1.23822 1.25988 1.88188 1.19231 0.90985 0.85220 0.93105 1.21687 1.00309 0.90926 1.22590 1.18609 0.88119 0.93200 0.87376 1.20831 0.95964 0.91915 1.42945 0.90665 1.28584 1.12670 0.90416 0.88334 1.70676 1.11360 1.29878 1.31661 0.81514 0.67864 0.70477 0.79021 1.26006 1.19937 1.21900 1.66694 1.07238 1.29183 1.27607 1.22708 1.01046 0.85185 0.91144 1.17712 0.86054 0.83985 1.28462 1.91322 1.75315 1.50210 1.96210 0.92304 0.92272 0.85037 0.84725 0.90382 0.79983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.84 113.37 1.12 1.68 14 2 O -0.33 -12.21 10.41 -91.39 -0.95 -13.17 14 3 C 0.17 7.12 6.73 22.73 0.15 7.27 14 4 C -0.33 -14.87 8.83 22.92 0.20 -14.67 14 5 C 0.25 12.48 6.39 40.18 0.26 12.73 14 6 C -0.49 -25.55 9.57 23.46 0.22 -25.32 14 7 H 0.08 3.95 8.05 -2.91 -0.02 3.93 14 8 C 0.02 0.98 5.52 85.28 0.47 1.46 14 9 N -0.81 -43.01 13.65 21.83 0.30 -42.71 14 10 Si 1.18 54.69 25.55 68.60 1.75 56.44 14 11 H -0.33 -14.87 7.11 99.48 0.71 -14.16 14 12 H -0.27 -12.36 6.67 99.48 0.66 -11.69 14 13 H -0.29 -13.39 7.11 99.48 0.71 -12.69 14 14 N -0.59 -28.31 4.54 -189.08 -0.86 -29.17 14 15 C 0.16 6.84 11.16 84.90 0.95 7.79 14 16 C -0.14 -5.89 7.38 22.79 0.17 -5.73 14 17 F -0.15 -6.22 17.17 44.97 0.77 -5.45 14 18 H 0.06 1.51 7.69 -2.38 -0.02 1.49 14 19 H 0.06 1.52 7.72 -2.39 -0.02 1.50 14 20 H 0.13 2.44 8.14 -2.38 -0.02 2.42 14 21 H 0.13 5.45 6.45 -2.91 -0.02 5.43 14 22 H 0.29 14.44 8.72 -92.71 -0.81 13.63 14 23 H 0.18 6.23 8.06 -2.91 -0.02 6.21 14 Total: -1.00 -58.47 212.46 5.70 -52.77 By element: Atomic # 1 Polarization: -5.08 SS G_CDS: 1.15 Total: -3.93 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 3.54 Total: -14.78 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -0.56 Total: -71.89 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.95 Total: -13.17 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.77 Total: -5.45 kcal Atomic # 14 Polarization: 54.69 SS G_CDS: 1.75 Total: 56.44 kcal Total: -58.47 5.70 -52.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213882979.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.803 kcal (2) G-P(sol) polarization free energy of solvation -58.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds