Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35657 * 116.99873 * 2 1 4 4 N 1.31749 * 119.58518 * 5.35752 * 3 2 1 5 5 C 1.33731 * 121.46452 * 179.97438 * 4 3 2 6 6 C 1.41210 * 119.76392 * 180.02562 * 5 4 3 7 7 H 1.08008 * 120.00167 * 171.30633 * 6 5 4 8 8 C 1.40006 * 120.00107 * 351.30513 * 6 5 4 9 9 N 1.30768 * 120.00099 * 187.22716 * 8 6 5 10 10 Si 1.86800 * 120.00000 * 7.22169 * 8 6 5 11 11 H 1.48504 * 109.47242 * 182.11660 * 10 8 6 12 12 H 1.48500 * 109.47217 * 302.11769 * 10 8 6 13 13 H 1.48503 * 109.47085 * 62.11685 * 10 8 6 14 14 C 1.40650 * 120.47285 * 0.27227 * 5 4 3 15 15 C 1.38193 * 119.14423 * 359.43625 * 14 5 4 16 16 C 1.38976 * 118.63361 * 0.55272 * 15 14 5 17 17 F 1.35106 * 120.27127 * 179.70988 * 16 15 14 18 18 H 1.09004 * 109.47187 * 185.69704 * 1 2 3 19 19 H 1.09003 * 109.47316 * 305.69519 * 1 2 3 20 20 H 1.08999 * 109.47460 * 65.69380 * 1 2 3 21 21 H 0.97004 * 120.00227 * 354.87968 * 9 8 6 22 22 H 1.07998 * 120.42919 * 179.70096 * 14 5 4 23 23 H 1.08002 * 120.68199 * 180.28136 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 7 1.3237 2.3062 0.1070 5 6 1.8916 3.5169 0.1116 6 6 1.0842 4.6694 0.2286 7 1 1.5418 5.6369 0.3740 8 6 -0.3096 4.5581 0.1563 9 7 -1.0506 5.6350 0.1224 10 14 -1.1106 2.8713 0.1079 11 1 -2.5821 3.0255 -0.0192 12 1 -0.5904 2.1094 -1.0558 13 1 -0.7960 2.1379 1.3603 14 6 3.2869 3.6507 -0.0045 15 6 4.0654 2.5139 -0.1117 16 6 3.4373 1.2742 -0.1126 17 9 4.1659 0.1417 -0.2216 18 1 -0.3634 -1.0226 0.1020 19 1 -0.3634 0.5996 0.8346 20 1 -0.3634 0.4230 -0.9365 21 1 -0.6413 6.5088 0.2221 22 1 3.7443 4.6290 -0.0056 23 1 5.1395 2.5877 -0.1976 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213883059.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = -60.857087 kcal Electronic energy + Delta-G solvation = -12387.690208 eV Core-core repulsion = 9922.575357 eV Total energy + Delta-G solvation = -2465.114851 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.55676 -39.33253 -37.06866 -33.84989 -31.15235 -29.99060 -27.23473 -25.04820 -22.28545 -21.32473 -18.73760 -17.57769 -16.52339 -15.90474 -15.57408 -14.24520 -14.14862 -13.99811 -13.77453 -12.94342 -12.44196 -12.28238 -11.96515 -11.66762 -11.52855 -10.96871 -10.08130 -10.00004 -9.78892 -9.34322 -8.70544 -8.03030 -7.51987 -7.48236 -4.99102 2.25776 2.35316 3.36113 3.41942 3.77681 3.82175 4.18871 4.36395 5.21818 5.44909 5.53731 5.75541 5.81634 5.86224 6.14646 6.16703 6.52506 6.87713 7.15531 7.22335 7.35282 7.63722 7.87313 8.18093 8.42879 9.07954 9.77647 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.040472 B = 0.017704 C = 0.012412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.675014 B = 1581.153253 C = 2255.264882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.313 6.313 3 C 0.349 3.651 4 N -0.606 5.606 5 C 0.268 3.732 6 C -0.456 4.456 7 H 0.089 0.911 8 C 0.038 3.962 9 N -0.792 5.792 10 Si 1.153 2.847 11 H -0.328 1.328 12 H -0.278 1.278 13 H -0.286 1.286 14 C -0.265 4.265 15 C -0.045 4.045 16 C -0.129 4.129 17 F -0.157 7.157 18 H 0.087 0.913 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.286 0.714 22 H 0.117 0.883 23 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -4.651 -0.149 5.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.220 6.220 3 C 0.166 3.834 4 N -0.341 5.341 5 C 0.146 3.854 6 C -0.487 4.487 7 H 0.107 0.893 8 C -0.184 4.184 9 N -0.412 5.412 10 Si 0.989 3.011 11 H -0.261 1.261 12 H -0.207 1.207 13 H -0.215 1.215 14 C -0.287 4.287 15 C -0.068 4.068 16 C -0.153 4.153 17 F -0.137 7.137 18 H 0.106 0.894 19 H 0.089 0.911 20 H 0.084 0.916 21 H 0.098 0.902 22 H 0.135 0.865 23 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.258 -5.567 -0.229 5.577 hybrid contribution 2.414 1.050 0.121 2.635 sum 2.156 -4.517 -0.108 5.006 Atomic orbital electron populations 1.23727 0.78799 1.02716 1.03431 1.86168 1.21853 1.25577 1.88410 1.19716 0.87842 0.84709 0.91140 1.66255 1.36979 0.98592 1.32310 1.18259 0.90548 0.88837 0.87771 1.20835 0.93481 0.93933 1.40496 0.89312 1.27952 0.94768 1.06998 0.88725 1.70668 1.40864 1.00492 1.29210 0.82353 0.69976 0.69558 0.79201 1.26150 1.20678 1.21497 1.21429 0.93968 0.97276 1.15992 1.20844 0.99119 0.90525 0.96338 1.16896 0.86099 0.82816 1.29444 1.91307 1.77030 1.49444 1.95895 0.89417 0.91147 0.91615 0.90238 0.86465 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.16 101.05 0.93 1.08 14 2 O -0.31 -6.98 10.34 -18.67 -0.19 -7.18 14 3 C 0.35 8.47 7.50 -16.98 -0.13 8.34 14 4 N -0.61 -15.29 3.99 -11.12 -0.04 -15.33 14 5 C 0.27 6.75 6.42 -85.00 -0.55 6.21 14 6 C -0.46 -11.78 9.55 -37.79 -0.36 -12.15 14 7 H 0.09 2.25 8.06 -52.48 -0.42 1.82 14 8 C 0.04 0.99 5.52 -17.34 -0.10 0.89 14 9 N -0.79 -20.53 13.65 55.55 0.76 -19.77 14 10 Si 1.15 26.87 22.31 -169.99 -3.79 23.08 14 11 H -0.33 -7.53 7.11 56.52 0.40 -7.13 14 12 H -0.28 -6.38 4.81 56.52 0.27 -6.11 14 13 H -0.29 -6.54 5.74 56.52 0.32 -6.22 14 14 C -0.26 -5.96 9.83 -38.69 -0.38 -6.34 14 15 C -0.04 -0.95 10.13 -39.32 -0.40 -1.34 14 16 C -0.13 -2.98 7.38 -38.70 -0.29 -3.27 14 17 F -0.16 -3.54 17.13 2.25 0.04 -3.50 14 18 H 0.09 1.26 8.14 -51.93 -0.42 0.83 14 19 H 0.07 1.39 4.60 -51.93 -0.24 1.15 14 20 H 0.07 1.24 5.90 -51.93 -0.31 0.93 14 21 H 0.29 7.04 8.73 -40.82 -0.36 6.68 14 22 H 0.12 2.38 8.06 -52.49 -0.42 1.96 14 23 H 0.12 2.17 8.06 -52.49 -0.42 1.75 14 LS Contribution 202.11 15.07 3.05 3.05 Total: -1.00 -27.53 202.11 -3.05 -30.58 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: -1.59 Total: -4.34 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.27 Total: -6.58 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.71 Total: -35.11 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.19 Total: -7.18 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -3.79 Total: 23.08 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -27.53 -3.05 -30.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213883059.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.275 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds